Task 96834694

Name	ebola_RdRp_v1_sample_00238300_r3_s-18.0_1
Workunit	67412963
Created	27 Oct 2025, 15:25:50 UTC
Sent	29 Oct 2025, 3:06:54 UTC
Report deadline	2 Nov 2025, 3:06:54 UTC
Received	1 Nov 2025, 16:42:19 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54585
Run time	10 hours 11 min 50 sec
CPU time	10 hours 10 min 47 sec
Validate state	Valid
Credit	430.92
Device peak FLOPS	8.60 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	240.20 MB
Peak swap size	247.78 MB
Peak disk usage	20.84 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
23:02:58 (424957): wrapper (7.17.26016): starting
23:02:59 (424957): wrapper (7.17.26016): starting
23:02:59 (424957): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x588d20a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7b7400a45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7b7400aadd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x588d20a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x588d20a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7b7400a45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7b7400aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7b7400af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7b7400b2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x588d20a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x588d20a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7b7400a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7b7400a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x588d20a1aa3a]

Exiting...
11:42:20 (524223): wrapper (7.17.26016): starting
11:42:20 (524223): wrapper (7.17.26016): starting
11:42:20 (524223): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63d50223ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7ca204445330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7ca20449eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7ca20444527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7ca2044288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7ca2044297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7ca2044a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7ca2044ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7ca2044addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63d50225c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63d50227b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7ca204445330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7ca2044ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7ca2044f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7ca20452975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x63d502251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63d50221e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7ca20442a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7ca20442a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63d50221aa3a]

Exiting...
03:15:40 (227805): wrapper (7.17.26016): starting
03:15:40 (227805): wrapper (7.17.26016): starting
03:15:40 (227805): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5d4d2303ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d58d8245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d58d829eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d58d824527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d58d82288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d58d82297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7d58d82a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7d58d82ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d58d82addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5d4d2305c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5d4d2307b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d58d8245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d58d82ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d58d82f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d58d832975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5d4d23051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5d4d2301e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d58d822a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d58d822a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5d4d2301aa3a]

Exiting...
09:55:02 (279029): wrapper (7.17.26016): starting
09:55:02 (279029): wrapper (7.17.26016): starting
09:55:02 (279029): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:42:08 (279029): cmdock exited; CPU time 6421.434717
11:42:08 (279029): called boinc_finish(0)

</stderr_txt>
]]>