Task 96835505

Name	ebola_RdRp_v1_sample_00348100_r2_s-18.0_1
Workunit	67417354
Created	27 Oct 2025, 18:42:24 UTC
Sent	29 Oct 2025, 3:56:13 UTC
Report deadline	2 Nov 2025, 3:56:13 UTC
Received	1 Nov 2025, 19:44:28 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54585
Run time	9 hours 6 min 6 sec
CPU time	9 hours 5 min 4 sec
Validate state	Valid
Credit	386.93
Device peak FLOPS	8.60 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	238.63 MB
Peak swap size	245.81 MB
Peak disk usage	20.49 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
00:07:16 (432834): wrapper (7.17.26016): starting
00:07:16 (432834): wrapper (7.17.26016): starting
00:07:16 (432834): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x59fdd7a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7ccddec45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7ccddec9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7ccddec4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7ccddec288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7ccddec297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7ccddeca8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7ccddecab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7ccddecaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x59fdd7a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x59fdd7a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7ccddec45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7ccddececadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7ccddecf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7ccdded2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x59fdd7a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x59fdd7a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7ccddec2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7ccddec2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x59fdd7a1aa3a]

Exiting...
11:42:20 (524226): wrapper (7.17.26016): starting
11:42:20 (524226): wrapper (7.17.26016): starting
11:42:20 (524226): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58acae03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7fbff1645330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7fbff16add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58acae05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58acae07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7fbff1645330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7fbff16ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fbff16f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7fbff172975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x58acae051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58acae01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7fbff162a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7fbff162a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58acae01aa3a]

Exiting...
03:47:29 (231696): wrapper (7.17.26016): starting
03:47:29 (231696): wrapper (7.17.26016): starting
03:47:29 (231696): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62798823ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72f522245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x72f52229eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x72f52224527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x72f5222288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x72f5222297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x72f5222a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x72f5222ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x72f5222addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62798825c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62798827b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72f522245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x72f5222ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x72f5222f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72f52232975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x627988251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62798821e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72f52222a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72f52222a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62798821aa3a]

Exiting...
09:55:02 (279032): wrapper (7.17.26016): starting
09:55:02 (279032): wrapper (7.17.26016): starting
09:55:02 (279032): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:44:13 (279032): cmdock exited; CPU time 17345.611794
14:44:13 (279032): called boinc_finish(0)

</stderr_txt>
]]>