Task 96836237

Name ebola_RdRp_v1_sample_00475000_r4_s-18.0_1
Workunit 67422432
Created 27 Oct 2025, 22:05:06 UTC
Sent 29 Oct 2025, 4:42:54 UTC
Report deadline 2 Nov 2025, 4:42:54 UTC
Received 2 Nov 2025, 2:21:37 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 78592
Run time 10 hours 19 min 53 sec
CPU time 10 hours 19 min 38 sec
Validate state Valid
Credit 263.68
Device peak FLOPS 7.79 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 239.77 MB
Peak swap size 246.91 MB
Peak disk usage 21.55 MB

Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
23:43:12 (849448): wrapper (7.17.26016): starting
23:43:12 (849448): wrapper (7.17.26016): starting
23:43:12 (849448): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (22 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62cae703ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x77bfd8445330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x77bfd849eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x77bfd844527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x77bfd84288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x77bfd84297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x77bfd84a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x77bfd84ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x77bfd84addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62cae705c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62cae707b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x77bfd8445330]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x62cae703aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x77bfd8445330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x77bfd84ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x77bfd84f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x77bfd852975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62cae7051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62cae701e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x77bfd842a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x77bfd842a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62cae701aa3a]

Exiting...
22:15:46 (574689): wrapper (7.17.26016): starting
22:15:46 (574689): wrapper (7.17.26016): starting
22:15:46 (574689): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:30:02 (666648): wrapper (7.17.26016): starting
09:30:02 (666648): wrapper (7.17.26016): starting
09:30:02 (666648): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:12:57 (2349): wrapper (7.17.26016): starting
10:12:57 (2349): wrapper (7.17.26016): starting
10:12:57 (2349): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:18:05 (2438): wrapper (7.17.26016): starting
10:18:05 (2438): wrapper (7.17.26016): starting
10:18:05 (2438): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (88724): wrapper (7.17.26016): starting
21:00:02 (88724): wrapper (7.17.26016): starting
21:00:02 (88724): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:21:26 (88724): cmdock exited; CPU time 1284.073058
21:21:26 (88724): called boinc_finish(0)

</stderr_txt>
]]>


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