Task 96839104

Name ebola_RdRp_v1_sample_01254700_r2_s-18.0_1
Workunit 67453618
Created 28 Oct 2025, 17:03:54 UTC
Sent 29 Oct 2025, 7:47:28 UTC
Report deadline 2 Nov 2025, 7:47:28 UTC
Received 30 Oct 2025, 3:11:37 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 76200
Run time 59 min 36 sec
CPU time 59 min 31 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 10.45 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.16 MB
Peak swap size 246.82 MB
Peak disk usage 20.46 MB

Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
05:56:54 (28565): wrapper (7.17.26016): starting
05:56:54 (28565): wrapper (7.17.26016): starting
05:56:54 (28565): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5c3349c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7e8a60e45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7e8a60e9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7e8a60e4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7e8a60e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7e8a60e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7e8a60ea8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7e8a60eab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7e8a60eaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5c3349c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5c3349c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7e8a60e45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e8a60eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e8a60ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x43)[0x7e8a60f0ec93]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x5c3349c51a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5c3349c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e8a60e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e8a60e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5c3349c1aa3a]

Exiting...
12:56:54 (84740): wrapper (7.17.26016): starting
12:56:54 (84740): wrapper (7.17.26016): starting
12:56:54 (84740): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:20:36 (162578): wrapper (7.17.26016): starting
21:20:36 (162578): wrapper (7.17.26016): starting
21:20:36 (162578): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:20:39 (162578): cmdock exited; CPU time 2.858548
21:20:39 (162578): called boinc_finish(0)

</stderr_txt>
]]>


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