Task 96907831

Name ebola_RdRp_v1_sidock_00021702_r2_s-24.0_0
Workunit 67628822
Created 29 Oct 2025, 9:39:01 UTC
Sent 29 Oct 2025, 17:56:57 UTC
Report deadline 2 Nov 2025, 17:56:57 UTC
Received 2 Nov 2025, 8:40:15 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 76200
Run time 6 hours 19 min 6 sec
CPU time 6 hours 18 min 59 sec
Validate state Valid
Credit 426.79
Device peak FLOPS 10.45 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.20 MB
Peak swap size 245.21 MB
Peak disk usage 19.82 MB

Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
21:21:07 (162665): wrapper (7.17.26016): starting
21:21:07 (162665): wrapper (7.17.26016): starting
21:21:07 (162665): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a875ca3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72f279a45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x72f279a9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x72f279a4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x72f279a288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x72f279a297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x72f279aa8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x72f279aab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x72f279aaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a875ca5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a875ca7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72f279a45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x72f279aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x72f279af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72f279b2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a875ca51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a875ca1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72f279a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72f279a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a875ca1aa3a]

Exiting...
22:23:12 (363572): wrapper (7.17.26016): starting
22:23:12 (363572): wrapper (7.17.26016): starting
22:23:12 (363572): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:28:31 (79296): wrapper (7.17.26016): starting
00:28:31 (79296): wrapper (7.17.26016): starting
00:28:31 (79296): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:40:02 (79296): cmdock exited; CPU time 7782.063439
02:40:02 (79296): called boinc_finish(0)

</stderr_txt>
]]>


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