Task 97226149

Name ebola_RdRp_v1_sidock_00095321_r3_s-24.0_0
Workunit 67923299
Created 9 Nov 2025, 16:52:27 UTC
Sent 11 Nov 2025, 17:44:57 UTC
Report deadline 15 Nov 2025, 17:44:57 UTC
Received 12 Nov 2025, 1:08:20 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 76998
Run time 4 hours 36 min 20 sec
CPU time 4 hours 35 min 46 sec
Validate state Valid
Credit 523.34
Device peak FLOPS 11.14 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 239.45 MB
Peak swap size 247.49 MB
Peak disk usage 20.05 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
12:45:02 (77659): wrapper (7.17.26016): starting
12:45:02 (77659): wrapper (7.17.26016): starting
12:45:02 (77659): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/nbfields/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x57019263ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x458d0) [0x7e0328c458d0]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c) [0x7e0328ca49bc]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e) [0x7e0328c4579e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x2c) [0x7e0328c288cd]
/lib/x86_64-linux-gnu/libc.so.6(+0x29909) [0x7e0328c29909]
/lib/x86_64-linux-gnu/libc.so.6(+0xaef65) [0x7e0328caef65]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x174) [0x7e0328cb4224]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x57019265c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x57019267b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x458d0) [0x7e0328c458d0]
/lib/x86_64-linux-gnu/libc.so.6(+0xaafe2) [0x7e0328caafe2]
/lib/x86_64-linux-gnu/libc.so.6(+0x9eae3) [0x7e0328c9eae3]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x32) [0x7e0328cf4932]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17) [0x7e0328d02657]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4a) [0x7e0328d336ba]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x570192651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x57019261e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a578) [0x7e0328c2a578]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b) [0x7e0328c2a63b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x57019261aa3a]

Exiting...
18:03:43 (7994): wrapper (7.17.26016): starting
18:03:43 (7994): wrapper (7.17.26016): starting
18:03:43 (7994): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/nbfields/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:08:09 (7994): cmdock exited; CPU time 7411.731288
20:08:09 (7994): called boinc_finish(0)

</stderr_txt>
]]>


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