Task 97226150

Name ebola_RdRp_v1_sidock_00095328_r2_s-24.0_0
Workunit 67923326
Created 9 Nov 2025, 16:52:27 UTC
Sent 11 Nov 2025, 17:44:57 UTC
Report deadline 15 Nov 2025, 17:44:57 UTC
Received 12 Nov 2025, 1:07:23 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 76998
Run time 4 hours 34 min 30 sec
CPU time 4 hours 33 min 58 sec
Validate state Valid
Credit 526.28
Device peak FLOPS 11.14 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.09 MB
Peak swap size 247.44 MB
Peak disk usage 20.12 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
12:45:04 (77692): wrapper (7.17.26016): starting
12:45:04 (77692): wrapper (7.17.26016): starting
12:45:04 (77692): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/nbfields/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x5f0a7d23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x458d0) [0x74f29a8458d0]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c) [0x74f29a8a49bc]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e) [0x74f29a84579e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x2c) [0x74f29a8288cd]
/lib/x86_64-linux-gnu/libc.so.6(+0x29909) [0x74f29a829909]
/lib/x86_64-linux-gnu/libc.so.6(+0xaef65) [0x74f29a8aef65]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x174) [0x74f29a8b4224]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x5f0a7d25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x5f0a7d27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x458d0) [0x74f29a8458d0]
/lib/x86_64-linux-gnu/libc.so.6(+0xaafe2) [0x74f29a8aafe2]
/lib/x86_64-linux-gnu/libc.so.6(+0x9eae3) [0x74f29a89eae3]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x32) [0x74f29a8f4932]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17) [0x74f29a902657]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4a) [0x74f29a9336ba]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x5f0a7d251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x5f0a7d21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a578) [0x74f29a82a578]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b) [0x74f29a82a63b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x5f0a7d21aa3a]

Exiting...
18:03:43 (7996): wrapper (7.17.26016): starting
18:03:43 (7996): wrapper (7.17.26016): starting
18:03:43 (7996): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/nbfields/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:07:09 (7996): cmdock exited; CPU time 7355.476615
20:07:09 (7996): called boinc_finish(0)

</stderr_txt>
]]>


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