Posts by Natalia

61) Message boards : News : Release CmDock v 0.1.3 (Message 979) Posted 28 May 2021 by Natalia Post: Dear participants! The following changes will be transparent, but if you are interested in technical details, then here they are. A new application cmdock-boinc-zcp has been released, including the new CmDock v0.1.3 release with (z)ipped input, (c)heckpoints and enhanced (p)rogress bar. In addition, a new docking experiment will begin under a new protocol. Thanks to the CmDock team and pschoefer & walli for the release!
62) Message boards : News : SiDock@home becomes a general drug discovery project (Message 964) Posted 25 May 2021 by Natalia Post: Hello! This is a good idea. Now we have Publications page. Today, no research papers on SiDock@home have been published. But there is a paper on the preliminary research held in COVID.SI project (a similar research is performed in SiDock@home), and 3 papers are submitted to conferences.
63) Message boards : News : Release CmDock v 0.1.2 (Message 928) Posted 20 May 2021 by Natalia Post: Hello everyone, We are glad to announce the new app version with checkpoints, CmDock v 0.1.2 (cmdock-boinc-zip 2.0 in the BOINC project). Currently it is implemented for Windows 64bit, Linux 64bit and Raspberry Pi (for RPi, please check this thread if you need instructions on configuring the client). The new release has been tested, but not on every existing computer. In case of any problems, please report. Thank you all for participation!
64) Message boards : Number crunching : Tasks don't suspend (Message 921) Posted 18 May 2021 by Natalia Post: Yes, app development for Mac OS has paused because we don't have a development account at the moment. But we hope to make it soon and implement task suspending and checkpoints for Mac OS.
65) Message boards : Number crunching : Suggestion for better task progress bar (Message 900) Posted 10 May 2021 by Natalia Post: Nice work!!! It will definitely go into the next release. Also, if you are willing, you may make a proper progress bar at the command line output. We would be grateful! (Natalia, on behalf on Marko and devs team)
66) Questions and Answers : Unix/Linux : Used bc command in Linux Debian (Message 899) Posted 10 May 2021 by Natalia Post: Dear Steffen, we don't use the script get_fraction_done anymore, but thank you for the point. We might return to the script later.
67) Questions and Answers : Macintosh : Please provide an app for Mac M1 (Apple Silicon / ARM64) (Message 888) Posted 5 May 2021 by Natalia Post: Hi! The team is working full on officially supporting Mac platform with signed Mac apps. And eventually also Mac M1 platform! We are commited to this.
68) Message boards : Number crunching : Resource Zero (Message 886) Posted 4 May 2021 by Natalia Post: Yes, it seems to be a problem of BOINC client.
69) Message boards : Number crunching : Cities as .png files in project directory (Message 880) Posted 4 May 2021 by Natalia Post: They serve as slides for the BOINC Simple view.
70) Message boards : Number crunching : No checkpoints? (Message 879) Posted 4 May 2021 by Natalia Post: The team needs to implement them in CmDock for all platforms, build and test. It is not a good idea to hurry just before the competition...
71) Message boards : Number crunching : Resource Zero (Message 878) Posted 4 May 2021 by Natalia Post: Could you specify where exactly did you set Resource=0?
72) Message boards : Number crunching : No checkpoints? (Message 875) Posted 4 May 2021 by Natalia Post: Even with Q2R2, we still need to recompute certain tasks. Quorum = 2 helps a lot.
73) Message boards : News : CmDock source code (Message 868) Posted 3 May 2021 by Natalia Post: Hello! We are not aware of such a dependency (could you please point out the file in question?) Upd.: is it https://gitlab.com/Jukic/cmdock/-/blob/master/meson.build#L158? This is an optional reference to the modules that can work with SMILES strings. P.S.: CmDock is a fork of an open-source project which had no non-free dependencies declared. We ourselves did not add anything non-free and will keep the project free always.
74) Questions and Answers : Web site : Badges (Message 836) Posted 28 Apr 2021 by Natalia Post: Thank you, fixed.
75) Questions and Answers : Web site : Badges (Message 829) Posted 27 Apr 2021 by Natalia Post: Hello! Here is the list of the badges.
76) Message boards : News : Half a year, the BOINC Workshop and a move to the new server (Message 828) Posted 27 Apr 2021 by Natalia Post: Natalia, I saw that we are using new server ;-) Cheers, Crtomir We are still moving.
77) Message boards : News : Half a year, the BOINC Workshop and a move to the new server (Message 815) Posted 23 Apr 2021 by Natalia Post: Society. The BOINC Pentathlon team selected SiDock@home as this year's Marathon project. The Marathon discipline is announced on 30 April and runs for two weeks from 05 through 18 May. It should be announced on 30. April, but you annouced it today. It's a pity that you not keep the secret and guarantee a fair challenge for every team. Mainly my fault. I hope it won't harm too much.
78) Message boards : News : Half a year, the BOINC Workshop and a move to the new server (Message 806) Posted 23 Apr 2021 by Natalia Post: Hello all! Today we celebrate six months of SiDock@home. Thank you for lots of support! Let us summarize the current state: Science. We are post-processing the obtained results and simultaneously performing virtual screening for the 5th target. With results obtained for several targets, we focus on viral proteases and are in the phase of getting physical samples of compounds for wet-lab testing. We will present the project at the BOINC Workshop on April 28. The event starts at 09:00 PDT / 12:00 EDT / 18:00 CEST / 19:00 EEST, our talk is at +00:40. Society. The BOINC Pentathlon team selected SiDock@home as this year's Marathon project. The Marathon discipline is announced on 30 April and runs for two weeks from 05 through 18 May. Technicals. Before the BOINC Pentathlon, we plan to move to a new physical server. The URL will stay the same. But we stop generating tasks and the project will be unavailable for 1-2 days. Also, we are implementing checkpoints as soon as possible. Best wishes, SiDock@home team
79) Questions and Answers : Macintosh : Massive overuse of CPUs - Project Removed (Message 795) Posted 19 Apr 2021 by Natalia Post: Hello! We are aware and will try to fix this. Thank you for reminding.
80) Message boards : News : Upcoming conference: ANTYCOVID-21 (online) (Message 764) Posted 2 Apr 2021 by Natalia Post: Dear all, on June 28-29 2021, there will be a scientific conference "ANTYCOVID-21: Computer science protecting human society against epidemics", in an online format, hosted in Poland. We aim to present a talk about SiDock@home and will be glad to see all of you as listeners. We also encourage you to submit own works if you participate in a covid-related research! Conference leaflet Dates: Paper submission ~~15 April~~ 30 May (extended) Notification of paper acceptance: 15 May Final paper submission and registration: 30 May Conference 28-29 June 2020 Submissions: The papers should be submitted via Easychair The submission may include long papers limited to 12 pages in Springer LaTex llncs format or short papers (up to 4 pages) All questions about submissions may be emailed to antycovid21 at easychair.org

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