Task 100081045

Name ebola_RdRp_v1_sidock_00740664_r2_s-24.0_0
Workunit 70504670
Created 17 Mar 2026, 13:12:24 UTC
Sent 17 Mar 2026, 15:53:18 UTC
Report deadline 21 Mar 2026, 15:53:18 UTC
Received 21 Mar 2026, 8:29:47 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 70402
Run time 11 hours 52 min 4 sec
CPU time 11 hours 41 min 23 sec
Validate state Valid
Credit 586.88
Device peak FLOPS 5.99 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.24 MB
Peak swap size 246.89 MB
Peak disk usage 20.43 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
21:28:33 (245952): wrapper (7.17.26016): starting
21:28:33 (245952): wrapper (7.17.26016): starting
21:28:33 (245952): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55ad0763ff8c]
/usr/lib/libc.so.6(+0x3e2d0) [0x7f5656b512d0]
/usr/lib/libc.so.6(+0x98a2c) [0x7f5656baba2c]
/usr/lib/libc.so.6(gsignal+0x20) [0x7f5656b511a0]
/usr/lib/libc.so.6(abort+0x26) [0x7f5656b385fe]
/usr/lib/libc.so.6(+0x26697) [0x7f5656b39697]
/usr/lib/libc.so.6(+0xa2cbc) [0x7f5656bb5cbc]
/usr/lib/libc.so.6(+0xa2cd4) [0x7f5656bb5cd4]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55ad0765c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55ad0767b8e4]
/usr/lib/libc.so.6(+0x3e2d0) [0x7f5656b512d0]
/usr/lib/libc.so.6(+0x9ef32) [0x7f5656bb1f32]
/usr/lib/libc.so.6(+0x9339c) [0x7f5656ba639c]
/usr/lib/libc.so.6(clock_nanosleep+0x32) [0x7f5656bf6452]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7f5656c02537]
/usr/lib/libc.so.6(usleep+0x4a) [0x7f5656c2ce2a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55ad07651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55ad0761e784]
/usr/lib/libc.so.6(+0x276c1) [0x7f5656b3a6c1]
/usr/lib/libc.so.6(__libc_start_main+0x89) [0x7f5656b3a7f9]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55ad0761aa3a]

Exiting...
22:49:05 (32135): wrapper (7.17.26016): starting
22:49:05 (32135): wrapper (7.17.26016): starting
22:49:05 (32135): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:29:36 (32135): cmdock exited; CPU time 22551.261688
09:29:36 (32135): called boinc_finish(0)

</stderr_txt>
]]>


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