Task 100092994

Name ebola_RdRp_v1_sidock_00743638_r3_s-24.0_0
Workunit 70516567
Created 17 Mar 2026, 13:22:54 UTC
Sent 18 Mar 2026, 1:52:56 UTC
Report deadline 22 Mar 2026, 1:52:56 UTC
Received 21 Mar 2026, 13:58:06 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 70402
Run time 11 hours 2 min 22 sec
CPU time 10 hours 55 min 47 sec
Validate state Valid
Credit 546.86
Device peak FLOPS 5.99 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.11 MB
Peak swap size 246.88 MB
Peak disk usage 20.48 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
08:33:53 (257406): wrapper (7.17.26016): starting
08:33:53 (257406): wrapper (7.17.26016): starting
08:33:53 (257406): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55a75163ff8c]
/usr/lib/libc.so.6(+0x3e2d0) [0x7fc0785b32d0]
/usr/lib/libc.so.6(+0x98a2c) [0x7fc07860da2c]
/usr/lib/libc.so.6(gsignal+0x20) [0x7fc0785b31a0]
/usr/lib/libc.so.6(abort+0x26) [0x7fc07859a5fe]
/usr/lib/libc.so.6(+0x26697) [0x7fc07859b697]
/usr/lib/libc.so.6(+0xa2cbc) [0x7fc078617cbc]
/usr/lib/libc.so.6(+0xa2cd4) [0x7fc078617cd4]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55a75165c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55a75167b8e4]
/usr/lib/libc.so.6(+0x3e2d0) [0x7fc0785b32d0]
/usr/lib/libc.so.6(+0x9ef32) [0x7fc078613f32]
/usr/lib/libc.so.6(+0x9339c) [0x7fc07860839c]
/usr/lib/libc.so.6(clock_nanosleep+0x32) [0x7fc078658452]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7fc078664537]
/usr/lib/libc.so.6(usleep+0x4a) [0x7fc07868ee2a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55a751651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55a75161e784]
/usr/lib/libc.so.6(+0x276c1) [0x7fc07859c6c1]
/usr/lib/libc.so.6(__libc_start_main+0x89) [0x7fc07859c7f9]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55a75161aa3a]

Exiting...
23:36:32 (33867): wrapper (7.17.26016): starting
23:36:32 (33867): wrapper (7.17.26016): starting
23:36:32 (33867): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/11/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:57:55 (33867): cmdock exited; CPU time 32917.998204
14:57:55 (33867): called boinc_finish(0)

</stderr_txt>
]]>


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