Task 100249553

Name ebola_RdRp_v1_sidock_00740620_r4_s-24.0_2
Workunit 70504496
Created 21 Mar 2026, 16:23:13 UTC
Sent 24 Mar 2026, 4:10:23 UTC
Report deadline 28 Mar 2026, 4:10:23 UTC
Received 25 Mar 2026, 11:11:33 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 78592
Run time 12 hours 55 min 56 sec
CPU time 12 hours 55 min 48 sec
Validate state Valid
Credit 594.99
Device peak FLOPS 7.41 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.80 MB
Peak swap size 246.00 MB
Peak disk usage 20.46 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:46:02 (684565): wrapper (7.17.26016): starting
01:46:02 (684565): wrapper (7.17.26016): starting
01:46:02 (684565): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (22 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x592796c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x709364845330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x70936489eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x70936484527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7093648288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7093648297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7093648a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7093648ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7093648addce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x592796c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x592796c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x709364845330]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x592796c3aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x709364845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7093648ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7093648f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x70936492975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x592796c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x592796c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x70936482a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x70936482a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x592796c1aa3a]

Exiting...
21:00:02 (832754): wrapper (7.17.26016): starting
21:00:02 (832754): wrapper (7.17.26016): starting
21:00:02 (832754): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:11:19 (832754): cmdock exited; CPU time 31133.128571
06:11:19 (832754): called boinc_finish(0)

</stderr_txt>
]]>


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