Task 100274653

Name ebola_RdRp_v1_sidock_00784797_r2_s-24.0_0
Workunit 70681202
Created 24 Mar 2026, 9:16:54 UTC
Sent 25 Mar 2026, 8:27:21 UTC
Report deadline 29 Mar 2026, 8:27:21 UTC
Received 28 Mar 2026, 9:46:57 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 82447
Run time 1 days 0 hours 6 min 22 sec
CPU time 23 hours 43 min 40 sec
Validate state Valid
Credit 1,232.61
Device peak FLOPS 3.49 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 239.27 MB
Peak swap size 246.63 MB
Peak disk usage 20.35 MB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
10:33:48 (1739103): wrapper (7.17.26016): starting
10:33:49 (1739103): wrapper (7.17.26016): starting
10:33:49 (1739103): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x65365e43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7ed81e698df0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9495c) [0x7ed81e6ed95c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12) [0x7ed81e698cc2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x22) [0x7ed81e6814ac]
/lib/x86_64-linux-gnu/libc.so.6(+0x29291) [0x7ed81e682291]
/lib/x86_64-linux-gnu/libc.so.6(+0x9e465) [0x7ed81e6f7465]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x19c) [0x7ed81e6fc41c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x65365e45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x65365e47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3fdf0) [0x7ed81e698df0]
/lib/x86_64-linux-gnu/libc.so.6(+0x9a9ee) [0x7ed81e6f39ee]
/lib/x86_64-linux-gnu/libc.so.6(+0x8f668) [0x7ed81e6e8668]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x2a) [0x7ed81e734fba]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13) [0x7ed81e7403d3]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x43) [0x7ed81e7693b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x65365e451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x65365e41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7ed81e682ca8]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85) [0x7ed81e682d65]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x65365e41aa3a]

Exiting...
18:38:39 (1749): wrapper (7.17.26016): starting
18:38:39 (1749): wrapper (7.17.26016): starting
18:38:39 (1749): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:46:45 (1749): cmdock exited; CPU time 57110.096118
10:46:45 (1749): called boinc_finish(0)

</stderr_txt>
]]>


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