Task 100278221

Name ebola_RdRp_v1_sidock_00785683_r1_s-24.0_0
Workunit 70684745
Created 24 Mar 2026, 9:20:08 UTC
Sent 25 Mar 2026, 12:47:48 UTC
Report deadline 29 Mar 2026, 12:47:48 UTC
Received 27 Mar 2026, 12:22:26 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 84434
Run time 45 min 24 sec
CPU time 44 min 4 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 2.58 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 237.89 MB
Peak swap size 245.22 MB
Peak disk usage 20.10 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:49:17 (20934): wrapper (7.17.26016): starting
13:49:17 (20934): wrapper (7.17.26016): starting
13:49:17 (20934): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62e03a83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d1695e45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d1695e9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d1695e4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d1695e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d1695e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7d1695ea8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7d1695eab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d1695eaddce]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62e03a85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62e03a87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d1695e45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d1695eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d1695ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d1695f2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62e03a851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62e03a81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d1695e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d1695e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62e03a81aa3a]

Exiting...
14:15:19 (4376): wrapper (7.17.26016): starting
14:15:19 (4376): wrapper (7.17.26016): starting
14:15:19 (4376): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:16:17 (4580): wrapper (7.17.26016): starting
13:16:17 (4580): wrapper (7.17.26016): starting
13:16:17 (4580): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:21:33 (6654): wrapper (7.17.26016): starting
13:21:33 (6654): wrapper (7.17.26016): starting
13:21:33 (6654): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:21:55 (6654): cmdock exited; CPU time 20.710207
13:21:55 (6654): called boinc_finish(0)

</stderr_txt>
]]>


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