Task 100310464

Name ebola_RdRp_v1_sidock_00793735_r1_s-24.0_0
Workunit 70716953
Created 24 Mar 2026, 9:48:15 UTC
Sent 27 Mar 2026, 4:05:18 UTC
Report deadline 31 Mar 2026, 4:05:18 UTC
Received 29 Mar 2026, 11:32:17 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 84127
Run time 1 days 6 hours 16 min 50 sec
CPU time 1 days 6 hours 3 min 22 sec
Validate state Valid
Credit 577.63
Device peak FLOPS 1.56 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.27 MB
Peak swap size 245.28 MB
Peak disk usage 20.36 MB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
03:03:42 (28351): wrapper (7.17.26016): starting
03:03:42 (28351): wrapper (7.17.26016): starting
03:03:42 (28351): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55a876c3ff8c]
/lib64/libc.so.6(+0x3fc30)[0x7f4e4483fc30]
/lib64/libc.so.6(+0x8d03c)[0x7f4e4488d03c]
/lib64/libc.so.6(raise+0x16)[0x7f4e4483fb86]
/lib64/libc.so.6(abort+0xd3)[0x7f4e44829873]
/lib64/libc.so.6(+0x2a1b2)[0x7f4e4482a1b2]
/lib64/libc.so.6(+0x970e7)[0x7f4e448970e7]
/lib64/libc.so.6(+0x9899c)[0x7f4e4489899c]
/lib64/libc.so.6(free+0x55)[0x7f4e4489b415]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55a876c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55a876c7b8e4]
/lib64/libc.so.6(+0x3fc30)[0x7f4e4483fc30]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f4e448d5795]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f4e448da247]
/lib64/libc.so.6(usleep+0x49)[0x7f4e449061e9]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55a876c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55a876c1e784]
/lib64/libc.so.6(+0x2a610)[0x7f4e4482a610]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f4e4482a6c0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55a876c1aa3a]

Exiting...
12:03:05 (41666): wrapper (7.17.26016): starting
12:03:05 (41666): wrapper (7.17.26016): starting
12:03:05 (41666): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:32:07 (41666): cmdock exited; CPU time 94630.018855
05:32:07 (41666): called boinc_finish(0)

</stderr_txt>
]]>


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