Task 100311553

Name ebola_RdRp_v1_sidock_00794002_r2_s-24.0_0
Workunit 70718022
Created 24 Mar 2026, 9:49:11 UTC
Sent 27 Mar 2026, 5:54:49 UTC
Report deadline 31 Mar 2026, 5:54:49 UTC
Received 27 Mar 2026, 21:35:50 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 70595
Run time 2 hours 57 min 38 sec
CPU time 2 hours 57 min 33 sec
Validate state Valid
Credit 430.33
Device peak FLOPS 8.66 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 241.25 MB
Peak swap size 248.34 MB
Peak disk usage 20.32 MB

Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
01:15:18 (61186): wrapper (7.17.26016): starting
01:15:18 (61186): wrapper (7.17.26016): starting
01:15:18 (61186): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x5d8f7063ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45f60) [0x779bf4045f60]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x17) [0x779bf40b5d27]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x5d8f7065c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x5d8f7067b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45f60) [0x779bf4045f60]
/lib/x86_64-linux-gnu/libc.so.6(+0xac772) [0x779bf40ac772]
/lib/x86_64-linux-gnu/libc.so.6(+0xa00ac) [0x779bf40a00ac]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x32) [0x779bf40f6372]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17) [0x779bf4104057]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4a) [0x779bf4136f6a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x5d8f70651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x5d8f7061e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a575) [0x779bf402a575]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x88) [0x779bf402a628]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x5d8f7061aa3a]

Exiting...
04:39:16 (2700): wrapper (7.17.26016): starting
04:39:16 (2700): wrapper (7.17.26016): starting
04:39:16 (2700): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:12:09 (2700): cmdock exited; CPU time 12763.503862
14:12:09 (2700): called boinc_finish(0)

</stderr_txt>
]]>


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