Task 81485462

Name	corona_RdRp_v2_sidock_01591724_r1_s-20_0
Workunit	53000506
Created	11 Apr 2024, 8:42:03 UTC
Sent	15 Apr 2024, 0:47:05 UTC
Report deadline	21 Apr 2024, 0:47:05 UTC
Received	8 May 2024, 15:32:18 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	31316
Run time	1 days 10 hours 59 min 20 sec
CPU time	1 days 10 hours 58 min 31 sec
Validate state	Task was reported too late to validate
Credit	0.00
Device peak FLOPS	6.83 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.25 MB
Peak swap size	200.55 MB
Peak disk usage	20.50 MB
Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
03:29:39 (246015): wrapper (7.17.26016): starting
03:29:39 (246015): wrapper (7.17.26016): starting
03:29:39 (246015): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:59:41 (2107): wrapper (7.17.26016): starting
09:59:41 (2107): wrapper (7.17.26016): starting
09:59:41 (2107): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ff34943ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f79bd642520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7f79bd6a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ff34945c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ff34947b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f79bd642520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f79bd6e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f79bd6ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f79bd71bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5ff349451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ff34941e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f79bd629d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f79bd629e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ff34941aa3a]

Exiting...
09:54:55 (2081): wrapper (7.17.26016): starting
09:54:55 (2081): wrapper (7.17.26016): starting
09:54:55 (2081): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:45:26 (2121): wrapper (7.17.26016): starting
10:45:27 (2121): wrapper (7.17.26016): starting
10:45:27 (2121): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:08:48 (48773): wrapper (7.17.26016): starting
13:08:49 (48773): wrapper (7.17.26016): starting
13:08:49 (48773): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:13:21 (1953): wrapper (7.17.26016): starting
17:13:21 (1953): wrapper (7.17.26016): starting
17:13:21 (1953): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56e40f83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7321b5042520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7321b50969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7321b5042476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7321b50287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7321b5089676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7321b50a0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7321b50a2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7321b50a5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56e40f85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56e40f87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7321b5042520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7321b50e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7321b50ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7321b511bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56e40f851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56e40f81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7321b5029d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7321b5029e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56e40f81aa3a]

Exiting...
09:53:31 (1960): wrapper (7.17.26016): starting
09:53:31 (1960): wrapper (7.17.26016): starting
09:53:31 (1960): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:49:50 (1972): wrapper (7.17.26016): starting
11:49:50 (1972): wrapper (7.17.26016): starting
11:49:50 (1972): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5dc55103ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7317c3642520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7317c36a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5dc55105c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5dc55107b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7317c3642520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7317c36e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7317c36ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7317c371bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5dc551051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5dc55101e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7317c3629d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7317c3629e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5dc55101aa3a]

Exiting...
10:00:59 (1967): wrapper (7.17.26016): starting
10:01:00 (1967): wrapper (7.17.26016): starting
10:01:00 (1967): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:34:28 (2019): wrapper (7.17.26016): starting
11:34:28 (2019): wrapper (7.17.26016): starting
11:34:28 (2019): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:32:05 (2019): cmdock exited; CPU time 21289.255554
17:32:05 (2019): called boinc_finish(0)

</stderr_txt>
]]>