Task 81496431
| Name | corona_RdRp_v2_sidock_01597203_r2_s-20_0 |
| Workunit | 53011465 |
| Created | 11 Apr 2024, 8:52:08 UTC |
| Sent | 16 Apr 2024, 8:01:38 UTC |
| Report deadline | 22 Apr 2024, 8:01:38 UTC |
| Received | 3 May 2024, 12:29:37 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 56341 |
| Run time | 6 days 15 hours 32 min 28 sec |
| CPU time | 6 days 14 hours 32 min 27 sec |
| Validate state | Valid |
| Credit | 2,288.59 |
| Device peak FLOPS | 1.00 GFLOPS |
| Application version | CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu |
| Peak working set size | 192.63 MB |
| Peak swap size | 200.19 MB |
| Peak disk usage | 22.83 MB |
Stderr output
<core_client_version>7.24.1</core_client_version> <![CDATA[ <stderr_txt> 09:01:42 (3092708): wrapper (7.17.26016): starting 09:01:43 (3092708): wrapper (7.17.26016): starting 09:01:43 (3092708): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (3784472): wrapper (7.17.26016): starting 09:00:01 (3784472): wrapper (7.17.26016): starting 09:00:01 (3784472): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:41:03 (3806129): wrapper (7.17.26016): starting 09:41:03 (3806129): wrapper (7.17.26016): starting 09:41:03 (3806129): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:54:22 (3823070): wrapper (7.17.26016): starting 09:54:22 (3823070): wrapper (7.17.26016): starting 09:54:22 (3823070): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (430589): wrapper (7.17.26016): starting 09:00:00 (430589): wrapper (7.17.26016): starting 09:00:00 (430589): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (1288509): wrapper (7.17.26016): starting 09:00:00 (1288509): wrapper (7.17.26016): starting 09:00:00 (1288509): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:23:53 (2123918): wrapper (7.17.26016): starting 09:23:53 (2123918): wrapper (7.17.26016): starting 09:23:53 (2123918): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:38:54 (2131613): wrapper (7.17.26016): starting 09:38:54 (2131613): wrapper (7.17.26016): starting 09:38:54 (2131613): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 10:04:21 (2144391): wrapper (7.17.26016): starting 10:04:22 (2144391): wrapper (7.17.26016): starting 10:04:22 (2144391): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 12:43:27 (2267292): wrapper (7.17.26016): starting 12:43:27 (2267292): wrapper (7.17.26016): starting 12:43:27 (2267292): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 12:47:24 (2290027): wrapper (7.17.26016): starting 12:47:24 (2290027): wrapper (7.17.26016): starting 12:47:24 (2290027): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) free(): invalid pointer SIGABRT: abort called Stack trace (20 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5eb05883ff8c] /usr/lib/libc.so.6(+0x3c770)[0x791535e05770] /usr/lib/libc.so.6(+0x8d32c)[0x791535e5632c] /usr/lib/libc.so.6(gsignal+0x18)[0x791535e056c8] /usr/lib/libc.so.6(abort+0xd7)[0x791535ded4b8] /usr/lib/libc.so.6(+0x25395)[0x791535dee395] /usr/lib/libc.so.6(+0x972a7)[0x791535e602a7] /usr/lib/libc.so.6(+0x995b4)[0x791535e625b4] /usr/lib/libc.so.6(__libc_free+0x73)[0x791535e64e93] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5eb05885c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5eb05887b8e4] /usr/lib/libc.so.6(+0x3c770)[0x791535e05770] /usr/lib/libc.so.6(clock_nanosleep+0x65)[0x791535e9d335] /usr/lib/libc.so.6(nanosleep+0x17)[0x791535ea83e7] /usr/lib/libc.so.6(usleep+0x49)[0x791535ed1589] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5eb058851adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5eb05881e784] /usr/lib/libc.so.6(+0x25cd0)[0x791535deecd0] /usr/lib/libc.so.6(__libc_start_main+0x8a)[0x791535deed8a] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5eb05881aa3a] Exiting... 12:51:43 (13737): wrapper (7.17.26016): starting 12:51:43 (13737): wrapper (7.17.26016): starting 12:51:43 (13737): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 15:17:40 (14055): wrapper (7.17.26016): starting 15:17:40 (14055): wrapper (7.17.26016): starting 15:17:40 (14055): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:21:32 (25583): wrapper (7.17.26016): starting 18:21:32 (25583): wrapper (7.17.26016): starting 18:21:32 (25583): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:28:44 (32105): wrapper (7.17.26016): starting 18:28:44 (32105): wrapper (7.17.26016): starting 18:28:44 (32105): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 20:12:48 (49205): wrapper (7.17.26016): starting 20:12:48 (49205): wrapper (7.17.26016): starting 20:12:48 (49205): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:50:31 (56733): wrapper (7.17.26016): starting 21:50:31 (56733): wrapper (7.17.26016): starting 21:50:31 (56733): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:58:55 (59099): wrapper (7.17.26016): starting 21:58:55 (59099): wrapper (7.17.26016): starting 21:58:55 (59099): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (315386): wrapper (7.17.26016): starting 09:00:00 (315386): wrapper (7.17.26016): starting 09:00:00 (315386): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 11:59:16 (420415): wrapper (7.17.26016): starting 11:59:17 (420415): wrapper (7.17.26016): starting 11:59:17 (420415): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 12:02:37 (422342): wrapper (7.17.26016): starting 12:02:37 (422342): wrapper (7.17.26016): starting 12:02:37 (422342): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:17:21 (604773): wrapper (7.17.26016): starting 18:17:21 (604773): wrapper (7.17.26016): starting 18:17:21 (604773): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:38:21 (618825): wrapper (7.17.26016): starting 18:38:21 (618825): wrapper (7.17.26016): starting 18:38:21 (618825): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:43:24 (621692): wrapper (7.17.26016): starting 18:43:24 (621692): wrapper (7.17.26016): starting 18:43:24 (621692): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:46:53 (623634): wrapper (7.17.26016): starting 18:46:53 (623634): wrapper (7.17.26016): starting 18:46:53 (623634): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:49:34 (714169): wrapper (7.17.26016): starting 21:49:34 (714169): wrapper (7.17.26016): starting 21:49:34 (714169): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:56:00 (718902): wrapper (7.17.26016): starting 21:56:00 (718902): wrapper (7.17.26016): starting 21:56:00 (718902): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (1032661): wrapper (7.17.26016): starting 09:00:00 (1032661): wrapper (7.17.26016): starting 09:00:00 (1032661): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:08:37 (1321120): wrapper (7.17.26016): starting 19:08:37 (1321120): wrapper (7.17.26016): starting 19:08:37 (1321120): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (1743493): wrapper (7.17.26016): starting 09:00:00 (1743493): wrapper (7.17.26016): starting 09:00:00 (1743493): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (2430999): wrapper (7.17.26016): starting 09:00:00 (2430999): wrapper (7.17.26016): starting 09:00:00 (2430999): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (3170140): wrapper (7.17.26016): starting 09:00:00 (3170140): wrapper (7.17.26016): starting 09:00:00 (3170140): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (3832812): wrapper (7.17.26016): starting 09:00:00 (3832812): wrapper (7.17.26016): starting 09:00:00 (3832812): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:22:44 (3843941): wrapper (7.17.26016): starting 09:22:44 (3843941): wrapper (7.17.26016): starting 09:22:44 (3843941): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 11:57:38 (632405): wrapper (7.17.26016): starting 11:57:39 (632405): wrapper (7.17.26016): starting 11:57:39 (632405): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 12:35:54 (682955): wrapper (7.17.26016): starting 12:35:54 (682955): wrapper (7.17.26016): starting 12:35:54 (682955): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 12:58:52 (37518): wrapper (7.17.26016): starting 12:58:52 (37518): wrapper (7.17.26016): starting 12:58:52 (37518): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 13:04:12 (43185): wrapper (7.17.26016): starting 13:04:12 (43185): wrapper (7.17.26016): starting 13:04:12 (43185): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (3199858): wrapper (7.17.26016): starting 09:00:00 (3199858): wrapper (7.17.26016): starting 09:00:00 (3199858): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:36:22 (3561591): wrapper (7.17.26016): starting 16:36:22 (3561591): wrapper (7.17.26016): starting 16:36:22 (3561591): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:45:29 (3570112): wrapper (7.17.26016): starting 16:45:29 (3570112): wrapper (7.17.26016): starting 16:45:29 (3570112): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 16:49:51 (3574412): wrapper (7.17.26016): starting 16:49:51 (3574412): wrapper (7.17.26016): starting 16:49:51 (3574412): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 17:01:56 (3584977): wrapper (7.17.26016): starting 17:01:56 (3584977): wrapper (7.17.26016): starting 17:01:56 (3584977): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 17:06:39 (3588980): wrapper (7.17.26016): starting 17:06:39 (3588980): wrapper (7.17.26016): starting 17:06:39 (3588980): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:27:11 (3794509): wrapper (7.17.26016): starting 21:27:11 (3794509): wrapper (7.17.26016): starting 21:27:11 (3794509): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (145326): wrapper (7.17.26016): starting 09:00:00 (145326): wrapper (7.17.26016): starting 09:00:00 (145326): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:14:08 (626261): wrapper (7.17.26016): starting 19:14:08 (626261): wrapper (7.17.26016): starting 19:14:08 (626261): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 21:47:18 (748104): wrapper (7.17.26016): starting 21:47:18 (748104): wrapper (7.17.26016): starting 21:47:18 (748104): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:30:44 (1761767): wrapper (7.17.26016): starting 19:30:44 (1761767): wrapper (7.17.26016): starting 19:30:44 (1761767): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (2227104): wrapper (7.17.26016): starting 09:00:01 (2227104): wrapper (7.17.26016): starting 09:00:01 (2227104): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (2921107): wrapper (7.17.26016): starting 09:00:01 (2921107): wrapper (7.17.26016): starting 09:00:01 (2921107): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 09:00:00 (3927256): wrapper (7.17.26016): starting 09:00:00 (3927256): wrapper (7.17.26016): starting 09:00:00 (3927256): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 13:29:21 (3927256): cmdock exited; CPU time 16042.566170 13:29:21 (3927256): called boinc_finish(0) </stderr_txt> ]]>
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