Task 81502176

Name	corona_RdRp_v2_sidock_01544385_r1_s-20_2
Workunit	52885828
Created	11 Apr 2024, 10:53:03 UTC
Sent	17 Apr 2024, 12:12:44 UTC
Report deadline	23 Apr 2024, 12:12:44 UTC
Received	9 May 2024, 5:47:43 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	31316
Run time	1 days 6 hours 29 min 20 sec
CPU time	1 days 6 hours 29 min
Validate state	Task was reported too late to validate
Credit	0.00
Device peak FLOPS	6.83 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	191.91 MB
Peak swap size	200.45 MB
Peak disk usage	20.46 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
14:12:49 (53483): wrapper (7.17.26016): starting
14:12:49 (53483): wrapper (7.17.26016): starting
14:12:49 (53483): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:13:21 (1988): wrapper (7.17.26016): starting
17:13:21 (1988): wrapper (7.17.26016): starting
17:13:21 (1988): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58d1a563ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x79e336a42520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x79e336a969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x79e336a42476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x79e336a287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x79e336a89676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x79e336aa0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x79e336aa2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x79e336aa5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58d1a565c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58d1a567b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x79e336a42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x79e336ae57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x79e336aea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x79e336b1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x58d1a5651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58d1a561e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x79e336a29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x79e336a29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58d1a561aa3a]

Exiting...
09:53:31 (1973): wrapper (7.17.26016): starting
09:53:31 (1973): wrapper (7.17.26016): starting
09:53:31 (1973): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:49:50 (2007): wrapper (7.17.26016): starting
11:49:50 (2007): wrapper (7.17.26016): starting
11:49:50 (2007): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:21:02 (17229): wrapper (7.17.26016): starting
14:21:02 (17229): wrapper (7.17.26016): starting
14:21:02 (17229): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5d88ca43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x75d39fe42520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x75d39fe969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x75d39fe42476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x75d39fe287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x75d39fe89676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x75d39fea0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x75d39fea2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x75d39fea5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5d88ca45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5d88ca47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x75d39fe42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x75d39fee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x75d39feea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x75d39ff1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5d88ca451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5d88ca41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x75d39fe29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x75d39fe29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5d88ca41aa3a]

Exiting...
10:00:59 (1976): wrapper (7.17.26016): starting
10:01:00 (1976): wrapper (7.17.26016): starting
10:01:00 (1976): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:34:28 (2042): wrapper (7.17.26016): starting
11:34:28 (2042): wrapper (7.17.26016): starting
11:34:28 (2042): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:47:30 (2042): cmdock exited; CPU time 72611.539785
07:47:30 (2042): called boinc_finish(0)

</stderr_txt>
]]>