Task 81531404

Name corona_RdRp_v2_sidock_01579843_r2_s-20_1
Workunit 52956745
Created 16 Apr 2024, 9:57:48 UTC
Sent 18 Apr 2024, 11:30:08 UTC
Report deadline 24 Apr 2024, 11:30:08 UTC
Received 19 Apr 2024, 18:07:55 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 2 hours 23 min 26 sec
CPU time 1 days 2 hours 22 min 17 sec
Validate state Valid
Credit 1,135.03
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.83 MB
Peak swap size 200.52 MB
Peak disk usage 20.59 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
17:07:43 (5214): wrapper (7.17.26016): starting
17:07:43 (5214): wrapper (7.17.26016): starting
17:07:43 (5214): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55e25a36ff8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7f6ea0afd3c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f6ea093a03b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f6ea0919859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7f6ea098429e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7f6ea098c32c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7f6ea098db5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55e25a38c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55e25a3ab8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7f6ea093a0c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f6ea09d426f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f6ea09d9ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f6ea0a0c88f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55e25a381adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55e25a34e784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f6ea091b0b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55e25a34aa3a]

Exiting...
01:10:09 (1786): wrapper (7.17.26016): starting
01:10:09 (1786): wrapper (7.17.26016): starting
01:10:09 (1786): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:07:41 (1786): cmdock exited; CPU time 71795.913018
21:07:41 (1786): called boinc_finish(0)

</stderr_txt>
]]>


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