Task 81593334

Name	corona_RdRp_v2_sidock_01625111_r2_s-20_0
Workunit	53087277
Created	24 Apr 2024, 21:34:27 UTC
Sent	26 Apr 2024, 21:59:43 UTC
Report deadline	2 May 2024, 21:59:43 UTC
Received	9 May 2024, 21:38:36 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	53394
Run time	1 days 2 hours 14 min 22 sec
CPU time	1 days 2 hours 14 min 22 sec
Validate state	Valid
Credit	1,354.38
Device peak FLOPS	8.97 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.59 MB
Peak swap size	200.66 MB
Peak disk usage	20.58 MB
Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
00:03:30 (10461): wrapper (7.17.26016): starting
00:03:30 (10461): wrapper (7.17.26016): starting
00:03:30 (10461): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:03:51 (12162): wrapper (7.17.26016): starting
05:03:51 (12162): wrapper (7.17.26016): starting
05:03:51 (12162): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:24:50 (14162): wrapper (7.17.26016): starting
22:24:50 (14162): wrapper (7.17.26016): starting
22:24:50 (14162): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:58:19 (14750): wrapper (7.17.26016): starting
23:58:19 (14750): wrapper (7.17.26016): starting
23:58:19 (14750): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:33:07 (15633): wrapper (7.17.26016): starting
03:33:07 (15633): wrapper (7.17.26016): starting
03:33:07 (15633): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:18:04 (18134): wrapper (7.17.26016): starting
22:18:04 (18134): wrapper (7.17.26016): starting
22:18:04 (18134): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:33:10 (19018): wrapper (7.17.26016): starting
02:33:10 (19018): wrapper (7.17.26016): starting
02:33:10 (19018): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:02:27 (19790): wrapper (7.17.26016): starting
05:02:27 (19790): wrapper (7.17.26016): starting
05:02:27 (19790): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558e5943ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x77b4a1642520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x77b4a16969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x77b4a1642476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x77b4a16287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x77b4a1689676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x77b4a16a0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x77b4a16a2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x77b4a16a5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558e5945c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558e5947b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x77b4a1642520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x77b4a16e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x77b4a16ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x77b4a171bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558e59451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558e5941e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x77b4a1629d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x77b4a1629e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558e5941aa3a]

Exiting...
02:04:44 (2219): wrapper (7.17.26016): starting
02:04:44 (2219): wrapper (7.17.26016): starting
02:04:44 (2219): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5671ac63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7b09dbe42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7b09dbea53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5671ac65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5671ac67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7b09dbe42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7b09dbee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7b09dbeea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7b09dbf1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5671ac651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5671ac61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7b09dbe29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7b09dbe29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5671ac61aa3a]

Exiting...
02:24:47 (2146): wrapper (7.17.26016): starting
02:24:47 (2146): wrapper (7.17.26016): starting
02:24:47 (2146): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:38:22 (2146): cmdock exited; CPU time 18811.868958
23:38:22 (2146): called boinc_finish(0)

</stderr_txt>
]]>