Task 81603310

Name	corona_RdRp_v2_sidock_01630097_r2_s-20_0
Workunit	53097249
Created	24 Apr 2024, 21:44:05 UTC
Sent	28 Apr 2024, 8:51:12 UTC
Report deadline	4 May 2024, 8:51:12 UTC
Received	28 Apr 2024, 18:07:28 UTC
Server state	Over
Outcome	Computation error
Client state	Aborted by user
Exit status	203 (0x000000CB) EXIT_ABORTED_VIA_GUI
Computer ID	55116
Run time	8 hours 1 min 37 sec
CPU time	8 hours 1 min 26 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	3.25 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.33 MB
Peak swap size	200.68 MB
Peak disk usage	20.12 MB

Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<message>
aborted by user</message>
<stderr_txt>
04:52:25 (33944): wrapper (7.17.26016): starting
04:52:25 (33944): wrapper (7.17.26016): starting
04:52:25 (33944): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b145d63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42990)[0x7064f4242990]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7064f42a881e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b145d65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b145d67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42990)[0x7064f4242990]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc1)[0x7064f42e5771]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7064f42f99b7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x49)[0x7064f4328159]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b145d651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b145d61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x28150)[0x7064f4228150]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x89)[0x7064f4228209]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b145d61aa3a]

Exiting...
12:46:41 (2048): wrapper (7.17.26016): starting
12:46:42 (2048): wrapper (7.17.26016): starting
12:46:42 (2048): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63c77003ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42990)[0x753b3c642990]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x753b3c6a881e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63c77005c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63c77007b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42990)[0x753b3c642990]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc1)[0x753b3c6e5771]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x753b3c6f99b7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x49)[0x753b3c728159]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x63c770051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63c77001e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x28150)[0x753b3c628150]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x89)[0x753b3c628209]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63c77001aa3a]

Exiting...
12:48:51 (3565): wrapper (7.17.26016): starting
12:48:52 (3565): wrapper (7.17.26016): starting
12:48:52 (3565): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)

</stderr_txt>
]]>