Task 81683445

Name	corona_RdRp_v2_sidock_01656497_r2_s-20_0
Workunit	53170049
Created	1 May 2024, 4:48:40 UTC
Sent	6 May 2024, 23:31:06 UTC
Report deadline	12 May 2024, 23:31:06 UTC
Received	14 May 2024, 9:40:58 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	43040
Run time	5 hours 35 min 41 sec
CPU time	5 hours 35 min 36 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	7.17 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.71 MB
Peak swap size	199.73 MB
Peak disk usage	20.17 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
02:31:11 (193269): wrapper (7.17.26016): starting
02:31:11 (193269): wrapper (7.17.26016): starting
02:31:11 (193269): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ba94403ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x72c83ce42520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x72c83ce969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x72c83ce42476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x72c83ce287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x72c83ce89676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x72c83cea0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x72c83cea2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x72c83cea5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ba94405c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ba94407b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x72c83ce42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x72c83cee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x72c83ceea677]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x72c83ceea5ae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x5ba944051a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ba94401e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x72c83ce29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x72c83ce29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ba94401aa3a]

Exiting...
11:02:26 (14543): wrapper (7.17.26016): starting
11:02:26 (14543): wrapper (7.17.26016): starting
11:02:26 (14543): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5924f403ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x722cf6e42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x722cf6ea53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5924f405c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5924f407b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x722cf6e42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x722cf6ee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x722cf6eea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x722cf6f1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5924f4051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5924f401e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x722cf6e29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x722cf6e29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5924f401aa3a]

Exiting...
12:40:25 (28103): wrapper (7.17.26016): starting
12:40:26 (28103): wrapper (7.17.26016): starting
12:40:26 (28103): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:40:30 (28103): cmdock exited; CPU time 3.036236
12:40:30 (28103): called boinc_finish(0)

</stderr_txt>
]]>