Task 81750583

Name	corona_RdRp_v2_sidock_01671425_r2_s-20_0
Workunit	53219905
Created	9 May 2024, 15:20:15 UTC
Sent	13 May 2024, 18:43:02 UTC
Report deadline	19 May 2024, 18:43:02 UTC
Received	15 May 2024, 18:30:17 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	58377
Run time	3 min 56 sec
CPU time	3 min 43 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	9.65 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	190.09 MB
Peak swap size	196.88 MB
Peak disk usage	20.32 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
21:00:21 (3724): wrapper (7.17.26016): starting
21:00:21 (3724): wrapper (7.17.26016): starting
21:00:21 (3724): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (22 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x605fc223ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f0303242520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f03032969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f0303242476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f03032287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f0303289676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f03032a0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f03032a2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f03032a5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x605fc225c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x605fc227b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f0303242520]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x605fc223aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f0303242520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f03032e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f03032ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f030331bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x605fc2251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x605fc221e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f0303229d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f0303229e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x605fc221aa3a]

Exiting...
21:47:13 (2385): wrapper (7.17.26016): starting
21:47:13 (2385): wrapper (7.17.26016): starting
21:47:13 (2385): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5667c743ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x781478e42520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x781478e969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x781478e42476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x781478e287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x781478e89676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x781478ea0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x781478ea2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x781478ea5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5667c745c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5667c747b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x781478e42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x781478ee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x781478eea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x781478f1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5667c7451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5667c741e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x781478e29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x781478e29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5667c741aa3a]

Exiting...
20:27:48 (2569): wrapper (7.17.26016): starting
20:27:48 (2569): wrapper (7.17.26016): starting
20:27:48 (2569): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:27:52 (2569): cmdock exited; CPU time 2.808438
20:27:52 (2569): called boinc_finish(0)

</stderr_txt>
]]>