Task 96702891

Name ebola_RdRp_v1_sample_00797100_r1_s-18.0_0
Workunit 67435313
Created 23 Oct 2025, 10:08:30 UTC
Sent 24 Oct 2025, 5:35:56 UTC
Report deadline 28 Oct 2025, 5:35:56 UTC
Received 24 Oct 2025, 18:39:01 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 60430
Run time 6 hours 36 min 1 sec
CPU time 6 hours 30 min 51 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 9.75 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.67 MB
Peak swap size 247.67 MB
Peak disk usage 20.85 MB

Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
02:47:00 (647558): wrapper (7.17.26016): starting
02:47:00 (647558): wrapper (7.17.26016): starting
02:47:00 (647558): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5bd168e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d93a3e45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7d93a3e9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7d93a3e4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7d93a3e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7d93a3e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7d93a3ea8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7d93a3eab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7d93a3eaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5bd168e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5bd168e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7d93a3e45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7d93a3eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7d93a3ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7d93a3f2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5bd168e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5bd168e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7d93a3e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7d93a3e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5bd168e1aa3a]

Exiting...
09:45:03 (698459): wrapper (7.17.26016): starting
09:45:03 (698459): wrapper (7.17.26016): starting
09:45:03 (698459): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:08:21 (2407): wrapper (7.17.26016): starting
12:08:21 (2407): wrapper (7.17.26016): starting
12:08:21 (2407): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:38:32 (2407): wrapper (7.17.26016): starting
12:38:32 (2407): wrapper (7.17.26016): starting
12:38:32 (2407): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:45:06 (2506): wrapper (7.17.26016): starting
12:45:06 (2506): wrapper (7.17.26016): starting
12:45:06 (2506): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:09:39 (2454): wrapper (7.17.26016): starting
13:09:39 (2454): wrapper (7.17.26016): starting
13:09:39 (2454): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:09:45 (2454): cmdock exited; CPU time 4.675048
13:09:45 (2454): called boinc_finish(0)

</stderr_txt>
]]>


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