Task 96705347

Name ebola_RdRp_v1_sample_00858600_r4_s-18.0_0
Workunit 67437776
Created 23 Oct 2025, 10:10:38 UTC
Sent 24 Oct 2025, 7:10:03 UTC
Report deadline 28 Oct 2025, 7:10:03 UTC
Received 24 Oct 2025, 18:39:01 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 60430
Run time 5 hours 37 min 15 sec
CPU time 5 hours 33 min 49 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 9.75 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.42 MB
Peak swap size 247.36 MB
Peak disk usage 20.69 MB

Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
04:08:24 (657042): wrapper (7.17.26016): starting
04:08:25 (657042): wrapper (7.17.26016): starting
04:08:25 (657042): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x59f5a8a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7089ce845330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7089ce89eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7089ce84527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7089ce8288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7089ce8297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7089ce8a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7089ce8ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7089ce8addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x59f5a8a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x59f5a8a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7089ce845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7089ce8ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7089ce8f9a27]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x43)[0x7089ce90ec93]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x59f5a8a51a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x59f5a8a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7089ce82a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7089ce82a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x59f5a8a1aa3a]

Exiting...
09:45:03 (698468): wrapper (7.17.26016): starting
09:45:03 (698468): wrapper (7.17.26016): starting
09:45:03 (698468): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:08:30 (2553): wrapper (7.17.26016): starting
12:08:30 (2553): wrapper (7.17.26016): starting
12:08:30 (2553): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:38:32 (2410): wrapper (7.17.26016): starting
12:38:32 (2410): wrapper (7.17.26016): starting
12:38:32 (2410): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:45:06 (2509): wrapper (7.17.26016): starting
12:45:06 (2509): wrapper (7.17.26016): starting
12:45:06 (2509): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:09:39 (2457): wrapper (7.17.26016): starting
13:09:39 (2457): wrapper (7.17.26016): starting
13:09:39 (2457): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/13/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:09:45 (2457): cmdock exited; CPU time 5.022770
13:09:45 (2457): called boinc_finish(0)

</stderr_txt>
]]>


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