Task 96706642

Name ebola_RdRp_v1_sample_00891100_r4_s-18.0_0
Workunit 67439076
Created 23 Oct 2025, 10:11:44 UTC
Sent 24 Oct 2025, 8:00:01 UTC
Report deadline 28 Oct 2025, 8:00:01 UTC
Received 24 Oct 2025, 18:39:01 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 60430
Run time 4 hours 56 min 14 sec
CPU time 4 hours 53 min 24 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 9.75 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.94 MB
Peak swap size 245.87 MB
Peak disk usage 20.50 MB

Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
04:21:44 (658666): wrapper (7.17.26016): starting
04:21:44 (658666): wrapper (7.17.26016): starting
04:21:44 (658666): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b5d8203ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72fef8845330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x72fef889eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x72fef884527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x72fef88288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x72fef88297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x72fef88a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x72fef88ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x72fef88addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b5d8205c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b5d8207b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72fef8845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x72fef88ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x72fef88f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72fef892975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b5d82051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b5d8201e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72fef882a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72fef882a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b5d8201aa3a]

Exiting...
09:45:03 (698479): wrapper (7.17.26016): starting
09:45:03 (698479): wrapper (7.17.26016): starting
09:45:03 (698479): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:33:42 (6738): wrapper (7.17.26016): starting
12:33:42 (6738): wrapper (7.17.26016): starting
12:33:42 (6738): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:38:32 (2421): wrapper (7.17.26016): starting
12:38:32 (2421): wrapper (7.17.26016): starting
12:38:32 (2421): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:45:06 (2518): wrapper (7.17.26016): starting
12:45:06 (2518): wrapper (7.17.26016): starting
12:45:06 (2518): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:09:39 (2464): wrapper (7.17.26016): starting
13:09:39 (2464): wrapper (7.17.26016): starting
13:09:39 (2464): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:09:45 (2464): cmdock exited; CPU time 4.920036
13:09:45 (2464): called boinc_finish(0)

</stderr_txt>
]]>


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