Task 96706691

Name ebola_RdRp_v1_sample_00892400_r2_s-18.0_0
Workunit 67439126
Created 23 Oct 2025, 10:11:46 UTC
Sent 24 Oct 2025, 8:10:02 UTC
Report deadline 28 Oct 2025, 8:10:02 UTC
Received 25 Oct 2025, 2:00:55 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 54584
Run time 3 hours 33 min 57 sec
CPU time 3 hours 33 min 11 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 10.13 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.55 MB
Peak swap size 245.64 MB
Peak disk usage 20.57 MB

Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
03:10:07 (57375): wrapper (7.17.26016): starting
03:10:07 (57375): wrapper (7.17.26016): starting
03:10:07 (57375): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x635b1c03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x779d66245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x779d6629eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x779d6624527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x779d662288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x779d662297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x779d662a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x779d662ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x779d662addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x635b1c05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x635b1c07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x779d66245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x779d662ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x779d662f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x779d6632975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x635b1c051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x635b1c01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x779d6622a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x779d6622a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x635b1c01aa3a]

Exiting...
20:07:40 (2664): wrapper (7.17.26016): starting
20:07:40 (2664): wrapper (7.17.26016): starting
20:07:40 (2664): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (10669): wrapper (7.17.26016): starting
21:00:02 (10669): wrapper (7.17.26016): starting
21:00:02 (10669): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:11 (10669): cmdock exited; CPU time 8.533420
21:00:11 (10669): called boinc_finish(0)

</stderr_txt>
]]>


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