Task 96711177

Name ebola_RdRp_v1_sample_01004000_r4_s-18.0_0
Workunit 67443592
Created 23 Oct 2025, 10:15:30 UTC
Sent 24 Oct 2025, 10:52:38 UTC
Report deadline 28 Oct 2025, 10:52:38 UTC
Received 25 Oct 2025, 2:00:55 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 54584
Run time 34 min 39 sec
CPU time 34 min 8 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 10.13 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.38 MB
Peak swap size 247.49 MB
Peak disk usage 20.44 MB

Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
06:23:16 (82132): wrapper (7.17.26016): starting
06:23:16 (82132): wrapper (7.17.26016): starting
06:23:16 (82132): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x604e2d43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72380d045330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x72380d09eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x72380d04527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x72380d0288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x72380d0297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x72380d0a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x72380d0ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x72380d0addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x604e2d45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x604e2d47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x72380d045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x72380d0ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x72380d0f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x72380d12975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x604e2d451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x604e2d41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x72380d02a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x72380d02a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x604e2d41aa3a]

Exiting...
20:07:40 (2700): wrapper (7.17.26016): starting
20:07:40 (2700): wrapper (7.17.26016): starting
20:07:40 (2700): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (10703): wrapper (7.17.26016): starting
21:00:02 (10703): wrapper (7.17.26016): starting
21:00:02 (10703): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:11 (10703): cmdock exited; CPU time 8.252136
21:00:11 (10703): called boinc_finish(0)

</stderr_txt>
]]>


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