Task 96750533

Name ebola_RdRp_v1_sample_00899000_r4_s-18.0_1
Workunit 67439392
Created 24 Oct 2025, 8:16:02 UTC
Sent 25 Oct 2025, 15:19:04 UTC
Report deadline 29 Oct 2025, 15:19:04 UTC
Received 27 Oct 2025, 11:21:48 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 77533
Run time 11 hours 26 min 45 sec
CPU time 11 hours 1 min 48 sec
Validate state Valid
Credit 541.09
Device peak FLOPS 8.02 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 239.14 MB
Peak swap size 246.32 MB
Peak disk usage 21.50 MB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
11:00:35 (62348): wrapper (7.17.26016): starting
11:00:35 (62348): wrapper (7.17.26016): starting
11:00:35 (62348): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55af6b03ff8c]
/usr/lib/libc.so.6(+0x3e540) [0x7ff84ac3e540]
/usr/lib/libc.so.6(+0x9894c) [0x7ff84ac9894c]
/usr/lib/libc.so.6(gsignal+0x20) [0x7ff84ac3e410]
/usr/lib/libc.so.6(abort+0x26) [0x7ff84ac2557a]
/usr/lib/libc.so.6(+0x26613) [0x7ff84ac26613]
/usr/lib/libc.so.6(+0xa2d65) [0x7ff84aca2d65]
/usr/lib/libc.so.6(+0xa2d84) [0x7ff84aca2d84]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55af6b05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55af6b07b8e4]
/usr/lib/libc.so.6(+0x3e540) [0x7ff84ac3e540]
/usr/lib/libc.so.6(+0x9f042) [0x7ff84ac9f042]
/usr/lib/libc.so.6(+0x931ac) [0x7ff84ac931ac]
/usr/lib/libc.so.6(clock_nanosleep+0x32) [0x7ff84ace3c12]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7ff84acefc97]
/usr/lib/libc.so.6(usleep+0x4a) [0x7ff84ad1a57a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55af6b051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55af6b01e784]
/usr/lib/libc.so.6(+0x27675) [0x7ff84ac27675]
/usr/lib/libc.so.6(__libc_start_main+0x89) [0x7ff84ac27729]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55af6b01aa3a]

Exiting...
09:56:35 (5735): wrapper (7.17.26016): starting
09:56:35 (5735): wrapper (7.17.26016): starting
09:56:35 (5735): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:35:16 (5765): wrapper (7.17.26016): starting
18:35:16 (5765): wrapper (7.17.26016): starting
18:35:16 (5765): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:15:04 (5765): cmdock exited; CPU time 5752.674460
20:15:04 (5765): called boinc_finish(0)

</stderr_txt>
]]>


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