Task 96768961

Name ebola_RdRp_v1_sidock_00004025_r1_s-24.0_0
Workunit 67498121
Created 26 Oct 2025, 19:17:10 UTC
Sent 27 Oct 2025, 0:57:26 UTC
Report deadline 31 Oct 2025, 0:57:26 UTC
Received 28 Oct 2025, 6:03:31 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 77533
Run time 11 hours 43 min 33 sec
CPU time 11 hours 11 min 16 sec
Validate state Valid
Credit 534.68
Device peak FLOPS 8.01 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.88 MB
Peak swap size 246.36 MB
Peak disk usage 19.96 MB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
10:21:54 (8225): wrapper (7.17.26016): starting
10:21:54 (8225): wrapper (7.17.26016): starting
10:21:54 (8225): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid size
SIGABRT: abort called
Stack trace (21 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x560e3843ff8c]
/usr/lib/libc.so.6(+0x3e540) [0x7fd4e103e540]
/usr/lib/libc.so.6(+0x9894c) [0x7fd4e109894c]
/usr/lib/libc.so.6(gsignal+0x20) [0x7fd4e103e410]
/usr/lib/libc.so.6(abort+0x26) [0x7fd4e102557a]
/usr/lib/libc.so.6(+0x26613) [0x7fd4e1026613]
/usr/lib/libc.so.6(+0xa2d65) [0x7fd4e10a2d65]
/usr/lib/libc.so.6(+0xa2d84) [0x7fd4e10a2d84]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x560e3845c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x560e3847b8e4]
/usr/lib/libc.so.6(+0x3e540) [0x7fd4e103e540]
/usr/lib/libc.so.6(+0x9f042) [0x7fd4e109f042]
/usr/lib/libc.so.6(+0x931ac) [0x7fd4e10931ac]
/usr/lib/libc.so.6(clock_nanosleep+0x32) [0x7fd4e10e3c12]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7fd4e10efc97]
/usr/lib/libc.so.6(usleep+0x4a) [0x7fd4e111a57a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x560e38451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x560e3841e784]
/usr/lib/libc.so.6(+0x27675) [0x7fd4e1027675]
/usr/lib/libc.so.6(__libc_start_main+0x89) [0x7fd4e1027729]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x560e3841aa3a]

Exiting...
18:35:16 (5774): wrapper (7.17.26016): starting
18:35:16 (5774): wrapper (7.17.26016): starting
18:35:16 (5774): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:21:46 (5636): wrapper (7.17.26016): starting
10:21:46 (5636): wrapper (7.17.26016): starting
10:21:46 (5636): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/ito-a520m/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:10:28 (5636): cmdock exited; CPU time 11859.099480
14:10:28 (5636): called boinc_finish(0)

</stderr_txt>
]]>


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