Task 96840793

Name	ebola_RdRp_v1_sample_01689800_r2_s-18.0_1
Workunit	67471022
Created	29 Oct 2025, 6:32:28 UTC
Sent	29 Oct 2025, 9:41:31 UTC
Report deadline	2 Nov 2025, 9:41:31 UTC
Received	30 Oct 2025, 2:02:10 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	79628
Run time	5 hours 15 min 30 sec
CPU time	5 hours 15 min 30 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	237.89 MB
Peak swap size	245.85 MB
Peak disk usage	20.95 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
09:03:01 (2948148): wrapper (7.17.26016): starting
09:03:01 (2948148): wrapper (7.17.26016): starting
09:03:01 (2948148): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/24/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58b27ea3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7abc43445330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7abc434add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58b27ea5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58b27ea7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7abc43445330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7abc434ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7abc434f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7abc4352975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x58b27ea51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58b27ea1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7abc4342a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7abc4342a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58b27ea1aa3a]

Exiting...
20:42:49 (4693): wrapper (7.17.26016): starting
20:42:49 (4693): wrapper (7.17.26016): starting
20:42:49 (4693): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/24/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x654171e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7728ec245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7728ec29eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7728ec24527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7728ec2288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7728ec2297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7728ec2a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7728ec2ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7728ec2addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x654171e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x654171e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7728ec245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7728ec2ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7728ec2f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7728ec32975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x654171e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x654171e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7728ec22a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7728ec22a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x654171e1aa3a]

Exiting...
21:03:07 (40962): wrapper (7.17.26016): starting
21:03:07 (40962): wrapper (7.17.26016): starting
21:03:07 (40962): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/24/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x627ba303ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7ee3f4445330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7ee3f449eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7ee3f444527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7ee3f44288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7ee3f44297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7ee3f44a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7ee3f44ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7ee3f44addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x627ba305c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x627ba307b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7ee3f4445330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7ee3f44ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7ee3f44f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7ee3f452975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x627ba3051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x627ba301e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7ee3f442a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7ee3f442a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x627ba301aa3a]

Exiting...
21:51:13 (72651): wrapper (7.17.26016): starting
21:51:13 (72651): wrapper (7.17.26016): starting
21:51:13 (72651): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/24/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:51:28 (72651): cmdock exited; CPU time 5.382133
21:51:28 (72651): called boinc_finish(0)

</stderr_txt>
]]>