Task 96901979

Name	ebola_RdRp_v1_sidock_00020232_r4_s-24.0_0
Workunit	67622944
Created	29 Oct 2025, 9:34:13 UTC
Sent	29 Oct 2025, 11:11:18 UTC
Report deadline	2 Nov 2025, 11:11:18 UTC
Received	30 Oct 2025, 2:02:10 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	79628
Run time	4 hours 39 min 8 sec
CPU time	4 hours 39 min 8 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	1.00 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	237.64 MB
Peak swap size	246.34 MB
Peak disk usage	19.74 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
10:22:44 (3019604): wrapper (7.17.26016): starting
10:22:44 (3019604): wrapper (7.17.26016): starting
10:22:44 (3019604): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b1bb963ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x76a98f045330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x76a98f0add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b1bb965c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b1bb967b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x76a98f045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x76a98f0ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x76a98f0f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x76a98f12975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b1bb9651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b1bb961e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x76a98f02a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x76a98f02a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b1bb961aa3a]

Exiting...
20:42:49 (4700): wrapper (7.17.26016): starting
20:42:49 (4700): wrapper (7.17.26016): starting
20:42:49 (4700): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x60108483ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x71bb44e45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x71bb44e9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x71bb44e4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x71bb44e288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x71bb44e297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x71bb44ea8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x71bb44eab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x71bb44eaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x60108485c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x60108487b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x71bb44e45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x71bb44eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x71bb44ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x71bb44f2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x601084851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x60108481e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x71bb44e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x71bb44e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x60108481aa3a]

Exiting...
21:03:07 (40969): wrapper (7.17.26016): starting
21:03:07 (40969): wrapper (7.17.26016): starting
21:03:07 (40969): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5d635c23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x791aee645330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x791aee69eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x791aee64527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x791aee6288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x791aee6297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x791aee6a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x791aee6ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x791aee6addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5d635c25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5d635c27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x791aee645330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x791aee6ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x791aee6f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x791aee72975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5d635c251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5d635c21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x791aee62a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x791aee62a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5d635c21aa3a]

Exiting...
21:51:13 (72658): wrapper (7.17.26016): starting
21:51:13 (72658): wrapper (7.17.26016): starting
21:51:13 (72658): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:51:28 (72658): cmdock exited; CPU time 5.184206
21:51:28 (72658): called boinc_finish(0)

</stderr_txt>
]]>