Task 96957301

Name	ebola_RdRp_v1_sidock_00034037_r2_s-24.0_0
Workunit	67678162
Created	29 Oct 2025, 10:18:48 UTC
Sent	1 Nov 2025, 4:12:06 UTC
Report deadline	5 Nov 2025, 4:12:06 UTC
Received	6 Nov 2025, 3:36:50 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	51286
Run time	11 hours 39 min 2 sec
CPU time	11 hours 26 min 15 sec
Validate state	Valid
Credit	430.85
Device peak FLOPS	4.08 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	238.24 MB
Peak swap size	246.12 MB
Peak disk usage	20.36 MB
Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
05:35:20 (4086259): wrapper (7.17.26016): starting
05:35:20 (4086259): wrapper (7.17.26016): starting
05:35:20 (4086259): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/ssd/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5fa92923ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ac054042520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7ac0540969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7ac054042476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7ac0540287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89677)[0x7ac054089677]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7ac0540a0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7ac0540a2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7ac0540a5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5fa92925c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5fa92927b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ac054042520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7ac0540e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7ac0540ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7ac05411bf9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5fa929251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5fa92921e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7ac054029d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7ac054029e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5fa92921aa3a]

Exiting...
20:00:01 (350683): wrapper (7.17.26016): starting
20:00:01 (350683): wrapper (7.17.26016): starting
20:00:01 (350683): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/ssd/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x559a7563ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x790ca0242520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x790ca02969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x790ca0242476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x790ca02287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89677)[0x790ca0289677]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x790ca02a0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x790ca02a2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x790ca02a5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x559a7565c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x559a7567b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x790ca0242520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x790ca02e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x790ca02ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x790ca031bf9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x559a75651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x559a7561e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x790ca0229d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x790ca0229e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x559a7561aa3a]

Exiting...
20:00:00 (241397): wrapper (7.17.26016): starting
20:00:01 (241397): wrapper (7.17.26016): starting
20:00:01 (241397): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/ssd/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x594fe243ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x753c69e42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x753c69ea53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x594fe245c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x594fe247b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x753c69e42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x753c69ee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x753c69eea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x753c69f1bf9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x594fe2451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x594fe241e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x753c69e29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x753c69e29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x594fe241aa3a]

Exiting...
20:00:00 (1895552): wrapper (7.17.26016): starting
20:00:01 (1895552): wrapper (7.17.26016): starting
20:00:01 (1895552): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/ssd/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57ebca63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fdf9a442520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fdf9a4969fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fdf9a442476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fdf9a4287f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89677)[0x7fdf9a489677]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7fdf9a4a0cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7fdf9a4a2a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7fdf9a4a5453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57ebca65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57ebca67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fdf9a442520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7fdf9a4e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7fdf9a4ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fdf9a51bf9f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x57ebca651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57ebca61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fdf9a429d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fdf9a429e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57ebca61aa3a]

Exiting...
20:00:00 (1663941): wrapper (7.17.26016): starting
20:00:01 (1663941): wrapper (7.17.26016): starting
20:00:01 (1663941): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/ssd/var/lib/boinc-client/slots/23/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:36:40 (1663941): cmdock exited; CPU time 6952.613335
22:36:40 (1663941): called boinc_finish(0)

</stderr_txt>
]]>