Task 96994202

Name ebola_RdRp_v1_sidock_00041170_r3_s-24.0_0
Workunit 67706695
Created 2 Nov 2025, 10:43:59 UTC
Sent 2 Nov 2025, 15:24:20 UTC
Report deadline 6 Nov 2025, 15:24:20 UTC
Received 3 Nov 2025, 8:36:09 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 71928
Run time 10 hours 29 min 28 sec
CPU time 9 hours 25 min 43 sec
Validate state Valid
Credit 607.81
Device peak FLOPS 7.39 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 238.99 MB
Peak swap size 246.23 MB
Peak disk usage 20.14 MB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
13:54:24 (399257): wrapper (7.17.26016): starting
13:54:24 (399257): wrapper (7.17.26016): starting
13:54:24 (399257): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x5aba4403ff8c]
/usr/lib/libc.so.6(+0x3e540) [0x72de3223e540]
/usr/lib/libc.so.6(__libc_free+0x17) [0x72de322a7f47]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x5aba4405c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x5aba4407b8e4]
/usr/lib/libc.so.6(+0x3e540) [0x72de3223e540]
/usr/lib/libc.so.6(+0x9f042) [0x72de3229f042]
/usr/lib/libc.so.6(+0x931ac) [0x72de322931ac]
/usr/lib/libc.so.6(clock_nanosleep+0x32) [0x72de322e3c12]
/usr/lib/libc.so.6(nanosleep+0x17) [0x72de322efc97]
/usr/lib/libc.so.6(usleep+0x4a) [0x72de3231a57a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x5aba44051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x5aba4401e784]
/usr/lib/libc.so.6(+0x27675) [0x72de32227675]
/usr/lib/libc.so.6(__libc_start_main+0x89) [0x72de32227729]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x5aba4401aa3a]

Exiting...
18:13:31 (8980): wrapper (7.17.26016): starting
18:13:31 (8980): wrapper (7.17.26016): starting
18:13:31 (8980): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:04:31 (10301): wrapper (7.17.26016): starting
20:04:31 (10301): wrapper (7.17.26016): starting
20:04:31 (10301): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:36:00 (10301): cmdock exited; CPU time 15751.327869
00:36:00 (10301): called boinc_finish(0)

</stderr_txt>
]]>


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