Task 96997140

Name ebola_RdRp_v1_sidock_00041902_r3_s-24.0_0
Workunit 67709623
Created 2 Nov 2025, 10:46:18 UTC
Sent 2 Nov 2025, 18:24:20 UTC
Report deadline 6 Nov 2025, 18:24:20 UTC
Received 3 Nov 2025, 10:17:25 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 71928
Run time 11 hours 11 min 2 sec
CPU time 10 hours 6 min 36 sec
Validate state Valid
Credit 666.81
Device peak FLOPS 7.39 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.77 MB
Peak swap size 248.28 MB
Peak disk usage 20.23 MB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
14:51:57 (432254): wrapper (7.17.26016): starting
14:51:57 (432254): wrapper (7.17.26016): starting
14:51:57 (432254): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x579f3503ff8c]
/usr/lib/libc.so.6(+0x3e540) [0x7f3d9223e540]
/usr/lib/libc.so.6(__libc_free+0x17) [0x7f3d922a7f47]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x579f3505c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x579f3507b8e4]
/usr/lib/libc.so.6(+0x3e540) [0x7f3d9223e540]
/usr/lib/libc.so.6(+0x9f042) [0x7f3d9229f042]
/usr/lib/libc.so.6(+0x931ac) [0x7f3d922931ac]
/usr/lib/libc.so.6(clock_nanosleep+0x32) [0x7f3d922e3c12]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7f3d922efc97]
/usr/lib/libc.so.6(usleep+0x4a) [0x7f3d9231a57a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x579f35051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x579f3501e784]
/usr/lib/libc.so.6(+0x27675) [0x7f3d92227675]
/usr/lib/libc.so.6(__libc_start_main+0x89) [0x7f3d92227729]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x579f3501aa3a]

Exiting...
18:13:31 (8990): wrapper (7.17.26016): starting
18:13:31 (8990): wrapper (7.17.26016): starting
18:13:31 (8990): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:04:31 (10304): wrapper (7.17.26016): starting
20:04:31 (10304): wrapper (7.17.26016): starting
20:04:31 (10304): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:17:13 (10304): cmdock exited; CPU time 21783.063490
02:17:13 (10304): called boinc_finish(0)

</stderr_txt>
]]>


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