Task 97020184

Name	ebola_RdRp_v1_sidock_00047656_r3_s-24.0_0
Workunit	67732639
Created	2 Nov 2025, 11:05:40 UTC
Sent	3 Nov 2025, 20:33:35 UTC
Report deadline	7 Nov 2025, 20:33:35 UTC
Received	9 Nov 2025, 4:47:42 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	78241
Run time	1 days 5 hours 24 min 49 sec
CPU time	1 days 2 hours 52 min 29 sec
Validate state	Valid
Credit	534.90
Device peak FLOPS	3.69 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	240.92 MB
Peak swap size	247.73 MB
Peak disk usage	20.06 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
01:19:05 (22230): wrapper (7.17.26016): starting
01:19:06 (22230): wrapper (7.17.26016): starting
01:19:06 (22230): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f080f63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f33e7245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f33e729eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f33e724527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f33e72288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7f33e72297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7f33e72a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7f33e72ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7f33e72addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f080f65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f080f67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f33e7245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7f33e72ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f33e72f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7f33e732972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f080f651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f080f61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f33e722a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f33e722a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f080f61aa3a]

Exiting...
18:59:45 (1394): wrapper (7.17.26016): starting
18:59:45 (1394): wrapper (7.17.26016): starting
18:59:45 (1394): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:49:17 (1431): wrapper (7.17.26016): starting
22:49:17 (1431): wrapper (7.17.26016): starting
22:49:17 (1431): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f4dcf43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x722050e45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x722050eadd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f4dcf45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f4dcf47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x722050e45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x722050eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x722050ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x722050f2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f4dcf451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f4dcf41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x722050e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x722050e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f4dcf41aa3a]

Exiting...
20:38:33 (1397): wrapper (7.17.26016): starting
20:38:33 (1397): wrapper (7.17.26016): starting
20:38:33 (1397): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:47:28 (1397): cmdock exited; CPU time 50433.615077
11:47:28 (1397): called boinc_finish(0)

</stderr_txt>
]]>