Task 97080971

Name ebola_RdRp_v1_sidock_00061082_r1_s-24.0_0
Workunit 67786341
Created 6 Nov 2025, 2:33:41 UTC
Sent 6 Nov 2025, 8:02:55 UTC
Report deadline 10 Nov 2025, 8:02:55 UTC
Received 7 Nov 2025, 4:04:43 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 80660
Run time 7 hours 40 min 12 sec
CPU time 6 hours 15 min 16 sec
Validate state Valid
Credit 701.08
Device peak FLOPS 10.76 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.36 MB
Peak swap size 248.36 MB
Peak disk usage 20.08 MB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
00:03:07 (135409): wrapper (7.17.26016): starting
00:03:07 (135409): wrapper (7.17.26016): starting
00:03:07 (135409): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c) [0x55b27783ff8c]
/usr/lib/libc.so.6(+0x44aa0) [0x7fb8e0c44aa0]
/usr/lib/libc.so.6(__libc_free+0x17) [0x7fb8e0cbd257]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd) [0x55b27785c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4) [0x55b27787b8e4]
/usr/lib/libc.so.6(+0x44aa0) [0x7fb8e0c44aa0]
/usr/lib/libc.so.6(+0xb2e42) [0x7fb8e0cb2e42]
/usr/lib/libc.so.6(+0xa644f) [0x7fb8e0ca644f]
/usr/lib/libc.so.6(clock_nanosleep+0x2e) [0x7fb8e0cfb63e]
/usr/lib/libc.so.6(nanosleep+0x17) [0x7fb8e0d0b737]
/usr/lib/libc.so.6(usleep+0x4b) [0x7fb8e0d40b5b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf) [0x55b277851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784) [0x55b27781e784]
/usr/lib/libc.so.6(+0x27b0b) [0x7fb8e0c27b0b]
/usr/lib/libc.so.6(__libc_start_main+0x8b) [0x7fb8e0c27bbb]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a) [0x55b27781aa3a]

Exiting...
10:29:34 (11126): wrapper (7.17.26016): starting
10:29:34 (11126): wrapper (7.17.26016): starting
10:29:34 (11126): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:24:50 (59000): wrapper (7.17.26016): starting
19:24:50 (59000): wrapper (7.17.26016): starting
19:24:50 (59000): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/12/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:04:30 (59000): cmdock exited; CPU time 1973.113839
20:04:30 (59000): called boinc_finish(0)

</stderr_txt>
]]>


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