Task 97084891

Name	ebola_RdRp_v1_sidock_00062062_r2_s-24.0_0
Workunit	67790262
Created	6 Nov 2025, 2:36:59 UTC
Sent	6 Nov 2025, 12:59:38 UTC
Report deadline	10 Nov 2025, 12:59:38 UTC
Received	9 Nov 2025, 7:44:37 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	78241
Run time	1 days 5 hours 31 min 21 sec
CPU time	1 days 2 hours 48 min 7 sec
Validate state	Valid
Credit	532.34
Device peak FLOPS	3.69 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	240.69 MB
Peak swap size	247.77 MB
Peak disk usage	20.18 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
04:11:01 (23992): wrapper (7.17.26016): starting
04:11:01 (23992): wrapper (7.17.26016): starting
04:11:01 (23992): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x639da1c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7273aa445330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7273aa49eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7273aa44527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7273aa4288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7273aa4297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7273aa4a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7273aa4ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7273aa4addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x639da1c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x639da1c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7273aa445330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7273aa4ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7273aa4f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7273aa52972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x639da1c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x639da1c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7273aa42a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7273aa42a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x639da1c1aa3a]

Exiting...
18:59:45 (1396): wrapper (7.17.26016): starting
18:59:45 (1396): wrapper (7.17.26016): starting
18:59:45 (1396): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:49:17 (1433): wrapper (7.17.26016): starting
22:49:17 (1433): wrapper (7.17.26016): starting
22:49:17 (1433): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6232a383ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7a6345445330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7a63454add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6232a385c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6232a387b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7a6345445330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7a63454ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7a63454f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7a634552972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6232a3851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6232a381e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7a634542a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7a634542a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6232a381aa3a]

Exiting...
20:38:33 (1399): wrapper (7.17.26016): starting
20:38:33 (1399): wrapper (7.17.26016): starting
20:38:33 (1399): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:44:25 (1399): cmdock exited; CPU time 60301.594983
14:44:25 (1399): called boinc_finish(0)

</stderr_txt>
]]>