Task 97084956

Name	ebola_RdRp_v1_sidock_00062078_r4_s-24.0_0
Workunit	67790328
Created	6 Nov 2025, 2:37:01 UTC
Sent	6 Nov 2025, 12:59:38 UTC
Report deadline	10 Nov 2025, 12:59:38 UTC
Received	9 Nov 2025, 7:31:54 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	78241
Run time	1 days 6 hours 38 min 1 sec
CPU time	1 days 3 hours 55 min 30 sec
Validate state	Valid
Credit	553.92
Device peak FLOPS	3.69 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	240.74 MB
Peak swap size	247.52 MB
Peak disk usage	20.35 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
02:53:10 (23378): wrapper (7.17.26016): starting
02:53:10 (23378): wrapper (7.17.26016): starting
02:53:10 (23378): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5bb38423ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f1d3e045330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f1d3e09eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f1d3e04527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f1d3e0288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7f1d3e0297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7f1d3e0a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7f1d3e0ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7f1d3e0addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5bb38425c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5bb38427b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7f1d3e045330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7f1d3e0ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f1d3e0f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7f1d3e12972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5bb384251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5bb38421e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f1d3e02a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f1d3e02a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5bb38421aa3a]

Exiting...
18:59:45 (1395): wrapper (7.17.26016): starting
18:59:45 (1395): wrapper (7.17.26016): starting
18:59:45 (1395): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:49:17 (1432): wrapper (7.17.26016): starting
22:49:17 (1432): wrapper (7.17.26016): starting
22:49:17 (1432): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62f873a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x75f2e4845330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x75f2e48add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62f873a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62f873a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x75f2e4845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x75f2e48ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x75f2e48f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x75f2e492972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62f873a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62f873a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x75f2e482a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x75f2e482a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62f873a1aa3a]

Exiting...
20:38:33 (1398): wrapper (7.17.26016): starting
20:38:33 (1398): wrapper (7.17.26016): starting
20:38:33 (1398): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:31:37 (1398): cmdock exited; CPU time 59657.052009
14:31:37 (1398): called boinc_finish(0)

</stderr_txt>
]]>