Task 97247229

Name	ebola_RdRp_v1_sidock_00061225_r2_s-24.0_1
Workunit	67786914
Created	10 Nov 2025, 8:55:02 UTC
Sent	12 Nov 2025, 12:12:15 UTC
Report deadline	16 Nov 2025, 12:12:15 UTC
Received	16 Nov 2025, 2:02:52 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	32495
Run time	9 hours 31 min 57 sec
CPU time	9 hours 30 min 2 sec
Validate state	Valid
Credit	468.88
Device peak FLOPS	6.72 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	239.51 MB
Peak swap size	245.84 MB
Peak disk usage	20.07 MB
Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
22:09:56 (14893): wrapper (7.17.26016): starting
22:09:56 (14893): wrapper (7.17.26016): starting
22:09:56 (14893): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x564ea0d31f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fd96d101420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7fd96cf956f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x564ea0d4e3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x564ea0d6d8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fd96cf3e090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fd96cfd823f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fd96cfddec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fd96d010a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x564ea0d43adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x564ea0d10784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fd96cf1f083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x564ea0d0ca3a]

Exiting...
19:41:31 (2177): wrapper (7.17.26016): starting
19:41:31 (2177): wrapper (7.17.26016): starting
19:41:31 (2177): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5592280ccf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7fe134def420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7fe134c836f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5592280e93dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5592281088e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fe134c2c090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fe134cc623f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fe134ccbec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fe134cfea7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5592280deadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5592280ab784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fe134c0d083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5592280a7a3a]

Exiting...
09:01:53 (2156): wrapper (7.17.26016): starting
09:01:53 (2156): wrapper (7.17.26016): starting
09:01:53 (2156): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55eced836f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f74d424f420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7f74d40e36f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55eced8533dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55eced8728e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f74d408c090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f74d412623f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f74d412bec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f74d415ea7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55eced848adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55eced815784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f74d406d083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55eced811a3a]

Exiting...
09:19:27 (2145): wrapper (7.17.26016): starting
09:19:27 (2145): wrapper (7.17.26016): starting
09:19:27 (2145): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55dd2c545f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f5bd1b12420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7f5bd19a66f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55dd2c5623dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55dd2c5818e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f5bd194f090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f5bd19e923f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f5bd19eeec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f5bd1a21a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55dd2c557adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55dd2c524784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f5bd1930083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55dd2c520a3a]

Exiting...
09:26:44 (2168): wrapper (7.17.26016): starting
09:26:44 (2168): wrapper (7.17.26016): starting
09:26:44 (2168): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:28:27 (35761): wrapper (7.17.26016): starting
19:28:27 (35761): wrapper (7.17.26016): starting
19:28:27 (35761): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:35:18 (50531): wrapper (7.17.26016): starting
22:35:19 (50531): wrapper (7.17.26016): starting
22:35:19 (50531): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5579edb69f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f28b03bc420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7f28b02506f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5579edb863dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5579edba58e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f28b01f9090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f28b029323f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f28b0298ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f28b02cba7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5579edb7badf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5579edb48784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f28b01da083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5579edb44a3a]

Exiting...
09:44:52 (2180): wrapper (7.17.26016): starting
09:44:52 (2180): wrapper (7.17.26016): starting
09:44:52 (2180): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:02:37 (2180): cmdock exited; CPU time 1059.072861
10:02:37 (2180): called boinc_finish(0)

</stderr_txt>
]]>