Task 97942170

Name	ebola_RdRp_v1_sidock_00257179_r3_s-24.0_0
Workunit	68570731
Created	11 Dec 2025, 22:27:55 UTC
Sent	15 Dec 2025, 18:35:35 UTC
Report deadline	19 Dec 2025, 18:35:35 UTC
Received	17 Dec 2025, 3:00:24 UTC
Server state	Over
Outcome	Validate error
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54588
Run time	5 hours 32 min 56 sec
CPU time	5 hours 32 min 44 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	9.82 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	240.23 MB
Peak swap size	247.47 MB
Peak disk usage	20.26 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
21:00:10 (68824): wrapper (7.17.26016): starting
21:00:10 (68824): wrapper (7.17.26016): starting
21:00:10 (68824): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ffa0c23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x75c0ef845330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x75c0ef8add55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ffa0c25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ffa0c27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x75c0ef845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x75c0ef8ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x75c0ef8f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x75c0ef92975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5ffa0c251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ffa0c21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x75c0ef82a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x75c0ef82a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ffa0c21aa3a]

Exiting...
10:10:02 (173664): wrapper (7.17.26016): starting
10:10:02 (173664): wrapper (7.17.26016): starting
10:10:02 (173664): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61ae5c43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7cc866645330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7cc86669eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7cc86664527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7cc8666288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7cc8666297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7cc8666a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7cc8666ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7cc8666addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61ae5c45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61ae5c47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7cc866645330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7cc8666ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7cc8666f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7cc86672975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x61ae5c451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61ae5c41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7cc86662a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7cc86662a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61ae5c41aa3a]

Exiting...
18:46:52 (2700): wrapper (7.17.26016): starting
18:46:52 (2700): wrapper (7.17.26016): starting
18:46:52 (2700): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5bcdf003ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x71ee37845330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x71ee3789eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x71ee3784527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x71ee378288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x71ee378297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x71ee378a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x71ee378ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x71ee378addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5bcdf005c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5bcdf007b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x71ee37845330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x71ee378ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x71ee378f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x71ee3792975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5bcdf0051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5bcdf001e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x71ee3782a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x71ee3782a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5bcdf001aa3a]

Exiting...
21:00:03 (20519): wrapper (7.17.26016): starting
21:00:03 (20519): wrapper (7.17.26016): starting
21:00:03 (20519): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:07 (20519): cmdock exited; CPU time 2.894147
21:00:07 (20519): called boinc_finish(0)

</stderr_txt>
]]>