Task 97951188

Name ebola_RdRp_v1_sidock_00259442_r4_s-24.0_0
Workunit 68579784
Created 11 Dec 2025, 22:35:31 UTC
Sent 16 Dec 2025, 5:46:38 UTC
Report deadline 20 Dec 2025, 5:46:38 UTC
Received 17 Dec 2025, 3:00:20 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 60274
Run time 4 hours 44 min 58 sec
CPU time 4 hours 44 min 47 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 9.71 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.24 MB
Peak swap size 247.54 MB
Peak disk usage 20.17 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:06:54 (106871): wrapper (7.17.26016): starting
02:06:54 (106871): wrapper (7.17.26016): starting
02:06:54 (106871): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5cbad0a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x70551b645330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x70551b69eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x70551b64527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x70551b6288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x70551b6297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x70551b6a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x70551b6ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x70551b6addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5cbad0a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5cbad0a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x70551b645330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x70551b6ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x70551b6f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x70551b72975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5cbad0a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5cbad0a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x70551b62a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x70551b62a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5cbad0a1aa3a]

Exiting...
09:45:02 (165778): wrapper (7.17.26016): starting
09:45:02 (165778): wrapper (7.17.26016): starting
09:45:02 (165778): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:48:27 (2687): wrapper (7.17.26016): starting
18:48:27 (2687): wrapper (7.17.26016): starting
18:48:27 (2687): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (19994): wrapper (7.17.26016): starting
21:00:02 (19994): wrapper (7.17.26016): starting
21:00:02 (19994): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:05 (19994): cmdock exited; CPU time 2.731790
21:00:05 (19994): called boinc_finish(0)

</stderr_txt>
]]>


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