Task 97951845

Name ebola_RdRp_v1_sidock_00259588_r1_s-24.0_0
Workunit 68580365
Created 11 Dec 2025, 22:36:05 UTC
Sent 16 Dec 2025, 6:36:02 UTC
Report deadline 20 Dec 2025, 6:36:02 UTC
Received 17 Dec 2025, 3:00:28 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 60430
Run time 4 hours 50 min 55 sec
CPU time 4 hours 50 min 41 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 9.29 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.60 MB
Peak swap size 247.69 MB
Peak disk usage 20.16 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:38:36 (124556): wrapper (7.17.26016): starting
03:38:36 (124556): wrapper (7.17.26016): starting
03:38:36 (124556): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5dd9e143ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7fe7d8245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7fe7d829eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7fe7d824527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7fe7d82288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7fe7d82297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7fe7d82a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7fe7d82ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7fe7d82addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5dd9e145c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5dd9e147b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7fe7d8245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7fe7d82ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fe7d82f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7fe7d832975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5dd9e1451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5dd9e141e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7fe7d822a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7fe7d822a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5dd9e141aa3a]

Exiting...
09:30:02 (167463): wrapper (7.17.26016): starting
09:30:02 (167463): wrapper (7.17.26016): starting
09:30:02 (167463): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:44:15 (2450): wrapper (7.17.26016): starting
18:44:15 (2450): wrapper (7.17.26016): starting
18:44:15 (2450): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (20098): wrapper (7.17.26016): starting
21:00:02 (20098): wrapper (7.17.26016): starting
21:00:02 (20098): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:06 (20098): cmdock exited; CPU time 3.535975
21:00:06 (20098): called boinc_finish(0)

</stderr_txt>
]]>


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