Task 97956270

Name ebola_RdRp_v1_sidock_00245148_r4_s-24.0_1
Workunit 68522608
Created 13 Dec 2025, 3:52:19 UTC
Sent 16 Dec 2025, 11:18:02 UTC
Report deadline 20 Dec 2025, 11:18:02 UTC
Received 17 Dec 2025, 3:00:20 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 60274
Run time 2 min 3 sec
CPU time 1 min 55 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 9.71 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 235.56 MB
Peak swap size 242.56 MB
Peak disk usage 19.91 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
11:07:28 (176734): wrapper (7.17.26016): starting
11:07:28 (176734): wrapper (7.17.26016): starting
11:07:28 (176734): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61849a43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7066b5645330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7066b569eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7066b564527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7066b56288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7066b56297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7066b56a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7066b56ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7066b56addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61849a45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61849a47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7066b5645330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7066b56ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7066b56f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7066b572975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x61849a451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61849a41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7066b562a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7066b562a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61849a41aa3a]

Exiting...
18:48:27 (2729): wrapper (7.17.26016): starting
18:48:27 (2729): wrapper (7.17.26016): starting
18:48:27 (2729): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:03 (20038): wrapper (7.17.26016): starting
21:00:03 (20038): wrapper (7.17.26016): starting
21:00:03 (20038): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:07 (20038): cmdock exited; CPU time 4.098344
21:00:07 (20038): called boinc_finish(0)

</stderr_txt>
]]>


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