Task 97976812

Name ebola_RdRp_v1_sidock_00263286_r1_s-24.0_0
Workunit 68595157
Created 16 Dec 2025, 16:12:31 UTC
Sent 17 Dec 2025, 12:47:02 UTC
Report deadline 21 Dec 2025, 12:47:02 UTC
Received 18 Dec 2025, 15:45:25 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 60274
Run time 4 hours 31 min 55 sec
CPU time 4 hours 31 min 45 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 9.71 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 237.18 MB
Peak swap size 245.50 MB
Peak disk usage 19.92 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:41:37 (2676): wrapper (7.17.26016): starting
22:41:37 (2676): wrapper (7.17.26016): starting
22:41:37 (2676): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b977983ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7e17d8645330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7e17d869eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7e17d864527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7e17d86288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7e17d86297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7e17d86a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7e17d86ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7e17d86addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b977985c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b977987b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7e17d8645330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7e17d86ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7e17d86f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7e17d872975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b9779851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b977981e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7e17d862a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7e17d862a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b977981aa3a]

Exiting...
08:02:18 (2645): wrapper (7.17.26016): starting
08:02:18 (2645): wrapper (7.17.26016): starting
08:02:18 (2645): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:45:02 (16637): wrapper (7.17.26016): starting
09:45:02 (16637): wrapper (7.17.26016): starting
09:45:02 (16637): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/27/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:45:07 (16637): cmdock exited; CPU time 4.183952
09:45:07 (16637): called boinc_finish(0)

</stderr_txt>
]]>


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