Task 98037440

Name ebola_RdRp_v1_sidock_00278402_r2_s-24.0_0
Workunit 68655622
Created 16 Dec 2025, 17:08:05 UTC
Sent 20 Dec 2025, 8:30:29 UTC
Report deadline 24 Dec 2025, 8:30:29 UTC
Received 21 Dec 2025, 1:32:14 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 72257
Run time 9 hours 22 min 21 sec
CPU time 9 hours 21 min 32 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 3.55 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.99 MB
Peak swap size 247.72 MB
Peak disk usage 20.11 MB

Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
03:30:40 (4051473): wrapper (7.17.26016): starting
03:30:40 (4051473): wrapper (7.17.26016): starting
03:30:40 (4051473): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/28/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62feca23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7aaa82a45330]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7aaa82aadd55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62feca25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62feca27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7aaa82a45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7aaa82aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7aaa82af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7aaa82b2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62feca251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62feca21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7aaa82a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7aaa82a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62feca21aa3a]

Exiting...
15:58:46 (4056402): wrapper (7.17.26016): starting
15:58:46 (4056402): wrapper (7.17.26016): starting
15:58:46 (4056402): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/28/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:31:11 (4058670): wrapper (7.17.26016): starting
20:31:11 (4058670): wrapper (7.17.26016): starting
20:31:11 (4058670): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/28/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:31:59 (4058670): cmdock exited; CPU time 47.271119
20:31:59 (4058670): called boinc_finish(0)

</stderr_txt>
]]>


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