Task 98075221

Name ebola_RdRp_v1_sidock_00285727_r1_s-24.0_0
Workunit 68684921
Created 20 Dec 2025, 20:00:07 UTC
Sent 21 Dec 2025, 23:37:02 UTC
Report deadline 25 Dec 2025, 23:37:02 UTC
Received 24 Dec 2025, 3:17:55 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 81587
Run time 8 hours 43 min 56 sec
CPU time 8 hours 43 min 56 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 1.00 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.07 MB
Peak swap size 246.20 MB
Peak disk usage 19.99 MB

Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
00:47:34 (2493008): wrapper (7.17.26016): starting
00:47:34 (2493008): wrapper (7.17.26016): starting
00:47:34 (2493008): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55858a03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f747c1c6050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8aeec)[0x7f747c214eec]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f747c1c5fb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f747c1b0472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f42f)[0x7f747c20942f]
/lib/x86_64-linux-gnu/libc.so.6(+0x9486a)[0x7f747c21e86a]
/lib/x86_64-linux-gnu/libc.so.6(+0x965f4)[0x7f747c2205f4]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7f747c222f4f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55858a05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55858a07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f747c1c6050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f747c259545]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f747c25de53]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f747c289245]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55858a051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55858a01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f747c1b124a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f747c1b1305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55858a01aa3a]

Exiting...
18:01:42 (2187): wrapper (7.17.26016): starting
18:01:43 (2187): wrapper (7.17.26016): starting
18:01:43 (2187): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:30:34 (3117): wrapper (7.17.26016): starting
20:30:34 (3117): wrapper (7.17.26016): starting
20:30:34 (3117): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:33:50 (4387): wrapper (7.17.26016): starting
00:33:50 (4387): wrapper (7.17.26016): starting
00:33:50 (4387): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:08:29 (4662): wrapper (7.17.26016): starting
01:08:30 (4662): wrapper (7.17.26016): starting
01:08:30 (4662): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:30:02 (5267): wrapper (7.17.26016): starting
02:30:03 (5267): wrapper (7.17.26016): starting
02:30:03 (5267): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:17:18 (5866): wrapper (7.17.26016): starting
03:17:18 (5866): wrapper (7.17.26016): starting
03:17:18 (5866): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/51/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:17:37 (5866): cmdock exited; CPU time 18.679943
03:17:37 (5866): called boinc_finish(0)

</stderr_txt>
]]>


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