Task 98126531

Name ebola_RdRp_v1_sidock_00298541_r1_s-24.0_0
Workunit 68736177
Created 20 Dec 2025, 20:44:45 UTC
Sent 25 Dec 2025, 9:19:36 UTC
Report deadline 29 Dec 2025, 9:19:36 UTC
Received 26 Dec 2025, 7:19:52 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 78592
Run time 10 hours 17 min 54 sec
CPU time 10 hours 17 min 46 sec
Validate state Valid
Credit 481.79
Device peak FLOPS 8.09 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 239.48 MB
Peak swap size 247.12 MB
Peak disk usage 20.35 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:53:18 (1300629): wrapper (7.17.26016): starting
03:53:18 (1300629): wrapper (7.17.26016): starting
03:53:18 (1300629): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56f05763ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x71cfd9a45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x71cfd9a9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x71cfd9a4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x71cfd9a288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x71cfd9a297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x71cfd9aa8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x71cfd9aab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x71cfd9aaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56f05765c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56f05767b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x71cfd9a45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x71cfd9aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x71cfd9af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x71cfd9b2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56f057651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56f05761e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x71cfd9a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x71cfd9a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56f05761aa3a]

Exiting...
11:26:23 (2502): wrapper (7.17.26016): starting
11:26:23 (2502): wrapper (7.17.26016): starting
11:26:23 (2502): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (79269): wrapper (7.17.26016): starting
21:00:02 (79269): wrapper (7.17.26016): starting
21:00:02 (79269): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:19:42 (79269): cmdock exited; CPU time 15395.724449
01:19:42 (79269): called boinc_finish(0)

</stderr_txt>
]]>


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