Task 98140683

Name	ebola_RdRp_v1_sidock_00293875_r3_s-24.0_1
Workunit	68717515
Created	24 Dec 2025, 15:15:23 UTC
Sent	26 Dec 2025, 4:52:34 UTC
Report deadline	30 Dec 2025, 4:52:34 UTC
Received	27 Dec 2025, 5:31:26 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54585
Run time	9 hours 58 min 24 sec
CPU time	9 hours 58 min 14 sec
Validate state	Valid
Credit	464.71
Device peak FLOPS	8.51 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	239.44 MB
Peak swap size	246.67 MB
Peak disk usage	20.48 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
02:02:33 (1372118): wrapper (7.17.26016): starting
02:02:33 (1372118): wrapper (7.17.26016): starting
02:02:33 (1372118): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x61042343ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x711f26445330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x711f2649eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x711f2644527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x711f264288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x711f264297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x711f264a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x711f264ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x711f264addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x61042345c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x61042347b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x711f26445330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x711f264ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x711f264f9a27]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x43)[0x711f2650ec93]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x610423451a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x61042341e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x711f2642a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x711f2642a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x61042341aa3a]

Exiting...
10:00:02 (1438342): wrapper (7.17.26016): starting
10:00:03 (1438342): wrapper (7.17.26016): starting
10:00:03 (1438342): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62e4f0e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x74acbc245330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x74acbc29eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x74acbc24527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x74acbc2288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x74acbc2297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x74acbc2a8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x74acbc2ab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x74acbc2addae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62e4f0e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62e4f0e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x74acbc245330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x74acbc2ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x74acbc2f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x74acbc32975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62e4f0e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62e4f0e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x74acbc22a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x74acbc22a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62e4f0e1aa3a]

Exiting...
21:00:02 (1526204): wrapper (7.17.26016): starting
21:00:02 (1526204): wrapper (7.17.26016): starting
21:00:02 (1526204): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/21/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:31:15 (1526204): cmdock exited; CPU time 9070.817016
23:31:15 (1526204): called boinc_finish(0)

</stderr_txt>
]]>