Task 98143743

Name ebola_RdRp_v1_sidock_00284295_r1_s-24.0_1
Workunit 68679193
Created 25 Dec 2025, 15:00:59 UTC
Sent 26 Dec 2025, 7:55:45 UTC
Report deadline 30 Dec 2025, 7:55:45 UTC
Received 27 Dec 2025, 8:19:42 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 60430
Run time 8 hours 58 min 23 sec
CPU time 8 hours 58 min 9 sec
Validate state Valid
Credit 567.13
Device peak FLOPS 9.29 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 240.78 MB
Peak swap size 248.06 MB
Peak disk usage 20.17 MB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:49:13 (119458): wrapper (7.17.26016): starting
02:49:13 (119458): wrapper (7.17.26016): starting
02:49:13 (119458): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5fcba303ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7a6a5ec45330]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7a6a5ec9eb2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7a6a5ec4527e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7a6a5ec288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7a6a5ec297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8ff5)[0x7a6a5eca8ff5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab38c)[0x7a6a5ecab38c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7a6a5ecaddae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5fcba305c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5fcba307b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45330)[0x7a6a5ec45330]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7a6a5ececadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7a6a5ecf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7a6a5ed2975c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5fcba3051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5fcba301e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7a6a5ec2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7a6a5ec2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5fcba301aa3a]

Exiting...
11:02:12 (4006): wrapper (7.17.26016): starting
11:02:12 (4006): wrapper (7.17.26016): starting
11:02:12 (4006): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:02 (77463): wrapper (7.17.26016): starting
21:00:02 (77463): wrapper (7.17.26016): starting
21:00:02 (77463): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/16/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:19:31 (77463): cmdock exited; CPU time 15927.683310
02:19:31 (77463): called boinc_finish(0)

</stderr_txt>
]]>


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